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AT5G14420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING domain ligase2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING domain ligase2 (RGLG2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 2368 Blast hits to 2301 proteins in 208 species: Archae - 0; Bacteria - 31; Metazoa - 1318; Fungi - 57; Plants - 528; Viruses - 55; Other Eukaryotes - 379 (source: NCBI BLink).
Protein Annotations
BioGrid:16570EC:6.3.2.-eggNOG:ENOG410XPC8eggNOG:KOG1327
EMBL:AL163817EMBL:AY099597EMBL:BT000249EMBL:CP002688
EMBL:DQ086862EnsemblPlants:AT5G14420EnsemblPlants:AT5G14420.1EnsemblPlants:AT5G14420.2
EnsemblPlants:AT5G14420.3EnsemblPlants:AT5G14420.4entrez:831293Gene3D:3.30.40.10
GeneID:831293Genevisible:Q9LY87GO:GO:0004842GO:GO:0005634
GO:GO:0005886GO:GO:0008270GO:GO:0009690GO:GO:0009850
GO:GO:0016567GO:GO:0016874GO:GO:0080148Gramene:AT5G14420.1
Gramene:AT5G14420.2Gramene:AT5G14420.3Gramene:AT5G14420.4hmmpanther:PTHR10857
hmmpanther:PTHR10857:SF28HOGENOM:HOG000005800InParanoid:Q9LY87InterPro:IPR001841
InterPro:IPR002035InterPro:IPR010734InterPro:IPR013083iPTMnet:Q9LY87
KEGG:ath:AT5G14420KO:K16280ncoils:CoilOMA:KENWRQS
PaxDb:Q9LY87Pfam:PF07002Pfam:PF13920Pfam:Q9LY87
Pfscan:PS50089PhylomeDB:Q9LY87PIR:T48615PRIDE:Q9LY87
PRO:PR:Q9LY87PROSITE:PS50089ProteinModelPortal:Q9LY87Proteomes:UP000006548
RefSeq:NP_196946.1RefSeq:NP_850818.1RefSeq:NP_974779.1RefSeq:NP_974780.1
SMART:SM00327SMR:Q9LY87STRING:3702.AT5G14420.1SUPFAM:SSF53300
SUPFAM:SSF57850TAIR:AT5G14420tair10-symbols:RGLG2UniGene:At.5177
UniProt:Q9LY87
Coordinates (TAIR10) chr5:-:4648355..4650563
Molecular Weight (calculated) 51580.30 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.53
Length 468 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)