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AT3G01650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING domain ligase1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING domain ligase1 (RGLG1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2); Has 24426 Blast hits to 13505 proteins in 916 species: Archae - 24; Bacteria - 3147; Metazoa - 7235; Fungi - 3380; Plants - 4548; Viruses - 743; Other Eukaryotes - 5349 (source: NCBI BLink).
Protein Annotations
BioGrid:5246EC:6.3.2.-eggNOG:ENOG410XPC8eggNOG:KOG1327
EMBL:AC009325EMBL:BX824117EMBL:CP002686EnsemblPlants:AT3G01650
EnsemblPlants:AT3G01650.1entrez:819911Gene3D:3.30.40.10GeneID:819911
Genevisible:Q9SS90GO:GO:0004842GO:GO:0005886GO:GO:0008270
GO:GO:0016567GO:GO:0016874GO:GO:0080148Gramene:AT3G01650.1
hmmpanther:PTHR10857hmmpanther:PTHR10857:SF28HOGENOM:HOG000005800InParanoid:Q9SS90
InterPro:IPR001841InterPro:IPR002035InterPro:IPR010734InterPro:IPR013083
KEGG:ath:AT3G01650KO:K16280OMA:PQLWDPPPaxDb:Q9SS90
Pfam:PF07002Pfam:PF13920Pfam:Q9SS90Pfscan:PS50089
PhylomeDB:Q9SS90PRIDE:Q9SS90PRO:PR:Q9SS90PROSITE:PS50089
ProteinModelPortal:Q9SS90Proteomes:UP000006548RefSeq:NP_186814.1SMART:SM00327
SMR:Q9SS90STRING:3702.AT3G01650.1SUPFAM:SSF53300SUPFAM:SSF57850
TAIR:AT3G01650tair10-symbols:RGLG1UniGene:At.22440UniProt:Q9SS90
Coordinates (TAIR10) chr3:+:242734..245062
Molecular Weight (calculated) 53314.20 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.49
Length 489 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)