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AT1G08680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARF GAP-like zinc finger-containing protein ZIGA4
Curator
Summary (TAIR10)
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.
Computational
Description (TAIR10)
ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 3488 Blast hits to 2959 proteins in 240 species: Archae - 0; Bacteria - 4; Metazoa - 1486; Fungi - 545; Plants - 477; Viruses - 2; Other Eukaryotes - 974 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41122WAeggNOG:KOG0702EMBL:AC003981EMBL:AF184145
EMBL:AK176415EMBL:AY081303EMBL:BT008398EMBL:CP002684
EnsemblPlants:AT1G08680EnsemblPlants:AT1G08680.1entrez:837390ExpressionAtlas:Q8RXE7
GeneID:837390Genevisible:Q8RXE7GO:GO:0005096GO:GO:0046872
hmmpanther:PTHR23180hmmpanther:PTHR23180:SF202HOGENOM:HOG000238390InParanoid:Q8RXE7
InterPro:IPR001164iPTMnet:Q8RXE7KEGG:ath:AT1G08680PaxDb:Q8RXE7
Pfam:PF01412Pfam:Q8RXE7Pfscan:PS50115PhylomeDB:Q8RXE7
PIR:T00722PIR:T00723PRIDE:Q8RXE7PRINTS:PR00405
PRO:PR:Q8RXE7PROSITE:PS50115ProteinModelPortal:Q8RXE7Proteomes:UP000006548
RefSeq:NP_001031002.1RefSeq:NP_172344.2RefSeq:NP_850941.1SMART:SM00105
SMR:Q8RXE7STRING:3702.AT1G08680.4SUPFAM:SSF57863TAIR:AT1G08680
tair10-symbols:AGD14tair10-symbols:ZIGA4UniGene:At.25375UniProt:Q8RXE7
Coordinates (TAIR10) chr1:+:2762820..2768387
Molecular Weight (calculated) 71348.00 Da
IEP (calculated) 5.36
GRAVY (calculated) -0.72
Length 649 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGSKREEER NEKIIRGLMK LPPNRRCINC NSLGPQYVCT TFWTFVCMAC SGIHREFTHR VKSVSMSKFT SKEVEVLQNG GNQRAREIYL KNWDHQRQRL
101: PENSNAERVR EFIKNVYVQK KYAGANDADK PSKDSQDHVS SEDMTRRANS YHSYSQSPPY DYQYEERRYG KIPLGFTGKS ASVKGLHAKA SSFVYSPGRF
201: SDHMFEDQFS NEDSAPRASD YSVSSAGDPF RSDIQSPNFQ QEAEFRSPQF QHSNAPPSEN LFPGRQHQRT TSSGSVRSVD SNFMSIKSYT SGGLGEAVSE
301: SRQNTGSQQG KTSNHVPLVA ESTKAPIDLF QLPGAPVAQS VDTFQPSIAP RSPPVNLQQA PQTYSFTPAN SFAGNLGQQP TSRPSELSAP KNEGWASFDN
401: PMPAAKSTNV ITSPGDFQLE LKIEEILQPS TSMQLPPYPS TVDQHALSIP SPWQEDLSNV LKDVVDNPQP WNAFPDSIEA NPLDSSRNIH QQVDGASTSS
501: YNTDHQHLES QVLEELSNDG TQTTRIPAGS SAFGFPGNIG MAPSYSEEAW QHVNEQKSAN PFDLPYDSEF DSNDMFLDMS SLQGALPDIQ TPQAFLNGVS
601: QPWLAADSVP SYLPAPAVAQ GGLAYMAGQA STNSAAQGPV AFTGGNPFA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)