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AT3G12680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : floral homeotic protein (HUA1)
Curator
Summary (TAIR10)
Member of the floral homeotic AGAMOUS pathway.
Computational
Description (TAIR10)
ENHANCER OF AG-4 1 (HUA1); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT2G47850.3); Has 2136 Blast hits to 795 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 325; Fungi - 89; Plants - 1572; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Protein Annotations
BioGrid:5782eggNOG:ENOG410IU2JeggNOG:ENOG410YAW6EMBL:AB024033
EMBL:AC069474EMBL:AK229145EMBL:AY024357EMBL:CP002686
EnsemblPlants:AT3G12680EnsemblPlants:AT3G12680.1entrez:820448Gene3D:4.10.1000.10
GeneID:820448Genevisible:Q941Q3GO:GO:0001709GO:GO:0003677
GO:GO:0003723GO:GO:0005634GO:GO:0006397GO:GO:0009908
GO:GO:0016607GO:GO:0046872Gramene:AT3G12680.1hmmpanther:PTHR12547
hmmpanther:PTHR12547:SF63HOGENOM:HOG000078745InParanoid:Q941Q3InterPro:IPR000571
KEGG:ath:AT3G12680OMA:QPIMGSHPaxDb:Q941Q3Pfam:PF00642
Pfam:Q941Q3Pfscan:PS50103PhylomeDB:Q941Q3PRIDE:Q941Q3
PRO:PR:Q941Q3PROSITE:PS50103ProteinModelPortal:Q941Q3Proteomes:UP000006548
RefSeq:NP_187874.2SMART:SM00356SMR:Q941Q3STRING:3702.AT3G12680.1
SUPFAM:SSF90229TAIR:AT3G12680tair10-symbols:HUA1UniGene:At.5670
UniProt:Q941Q3
Coordinates (TAIR10) chr3:-:4025276..4028999
Molecular Weight (calculated) 57656.50 Da
IEP (calculated) 7.62
GRAVY (calculated) -0.63
Length 524 amino acids
Sequence (TAIR10)
(BLAST)
001: MAHRQLYSYA LQPSYAAAAS TVSPAPPPPQ QPLPPKTGLS SLYGSSADHY FPDTTYRFLA RDGSEALSNY SGTLASSSSM YHHLPNTTAS HLAYPQLLQH
101: QEVAWPPGVE VPGAASAVEP LPPGVKRTSE ALYYPTLLGA HNTIGQTEAW YTTDYFTKRP KLESTSHLPI YPQRAGEKDC THYMQTRTCK FGESCRFDHP
201: IWVPEGGIPD WKEAPVVPNE EYPERPGEPD CPYYIKTQRC KYGSKCKFNH PREEAAVSVE TQDSLPERPS EPMCTFYMKT GKCKFGLSCK FHHPKDIQLP
301: SSSQDIGSSV GLTSEPDATN NPHVTFTPAL YHNSKGLPVR SGEVDCPFYL KTGSCKYGAT CRYNHPERTA FIPQAAGVNY SLVSSNTANL NLGLVTPATS
401: FYQTLTQPTL GVISATYPQR PGQSECDYYM KTGECKFGER CKFHHPADRL SAMTKQAPQQ PNVKLSLAGY PRREGALNCP YYMKTGTCKY GATCKFDHPP
501: PGEVMAKTTS EADAAGATNT DTTQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)