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AT5G54730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.525
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of yeast autophagy 18 (ATG18) F
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homolog of yeast autophagy 18 (ATG18) F (G18F); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Breast carcinoma amplified sequence 3 (InterPro:IPR022175), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) G (TAIR:AT1G03380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSW7eggNOG:KOG2109EMBL:AB022214EMBL:CP002688
EnsemblPlants:AT5G54730EnsemblPlants:AT5G54730.1entrez:835562Gene3D:2.130.10.10
GeneID:835562Genevisible:Q9FH32GO:GO:0005737GO:GO:0005774
GO:GO:0006914GO:GO:0015031GO:GO:0034045GO:GO:0042594
Gramene:AT5G54730.1hmmpanther:PTHR13268hmmpanther:PTHR13268:SF1HOGENOM:HOG000238347
InParanoid:Q9FH32InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR022175KEGG:ath:AT5G54730ncoils:CoilOMA:MRNGAQA
PaxDb:Q9FH32Pfam:PF12490Pfam:Q9FH32PhylomeDB:Q9FH32
PRIDE:Q9FH32PRO:PR:Q9FH32ProteinModelPortal:Q9FH32Proteomes:UP000006548
RefSeq:NP_200284.1SMART:SM00320SMR:Q9FH32STRING:3702.AT5G54730.1
SUPFAM:SSF50978TAIR:AT5G54730tair10-symbols:ATATG18Ftair10-symbols:ATG18F
tair10-symbols:G18FUniGene:At.29479UniProt:Q9FH32
Coordinates (TAIR10) chr5:-:22233977..22236804
Molecular Weight (calculated) 82784.30 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.29
Length 763 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKNGDGSSP KSPDGVVSRS ARSSFRALSN CLKVISSGAS TVARSAVSAA SSAVESHHDQ VLWAGFDNLQ KEDGDTRRVL LLAFKSGFQV WDVEDTENVH
101: VIVSAHDGQA FFMQMLLNPI NSGVLDDRFY KSRPLLAVCG DYSSKKISSD NPGSETVATP TNVYVYSLKS QSYVHTLKFR ATIYSVRCCS RIVAVLQAAQ
201: IDCFDAATLE MDYRIVTNSI VCGSLGVGYG PLAVGPRWIA YSGSRIATSS SAIFTSEIVS LSTSSPSVAQ FARDSSKQLA SGIANLGDKG YRSLTKYCSE
301: VLPNPYIPGL KGIGVGNEKV ADAESIGMVI VKDITNKSVI TQFKAHKSPI SALCFDQSGL LLVTASIQGH NINVFRIMPT ISTSRAVKTT TFAHLFRLQR
401: GFTNAVIQDI CFSKDSNLIV VGSSRGTSHL FEINPEKEGD APVPMSAISR IRSGNSSGWI GTVSGAASAA AGMVAGSVPG TVTSTFCYCD EKSNNNYYGS
501: VADMCSKTNL LVFAPSGCMT QYALREHQVG VGHETAAMTG FDSESGLETE GKLAVDPIRR WSMIQNQSRR ETHDPHSDIY GGGTSVDSKS KVFPEVVRKQ
601: SVEEAWKVSK KGTTRVVDKR HLYIYEAEQQ QTHLPTQLPL WARRKFRFQE LVLNRGEEIS GGGGREMEIE GIQTRTIEAR TRDLVPVWGY LQSPRSQQVI
701: NESIQSPSTT TQDDKVATLE GHGTETDLGA VHSEEQTQSE PVDKEGIAEE KNHSEDEDEE QVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)