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AT1G30810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), FY-rich, C-terminal subgroup (InterPro:IPR018516), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT2G34880.1); Has 2138 Blast hits to 1613 proteins in 188 species: Archae - 0; Bacteria - 2; Metazoa - 1141; Fungi - 449; Plants - 371; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).
Protein Annotations
BioGrid:25198EC:1.14.11.-eggNOG:ENOG410XR9JeggNOG:KOG1246
EMBL:AC004135EMBL:AY062485EMBL:CP002684EnsemblPlants:AT1G30810
EnsemblPlants:AT1G30810.1EnsemblPlants:AT1G30810.2entrez:839963GeneID:839963
Genevisible:F4I6G4GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0032453GO:GO:0034720GO:GO:0046872
GO:GO:0048573GO:GO:0051213Gramene:AT1G30810.1Gramene:AT1G30810.2
hmmpanther:PTHR10694hmmpanther:PTHR10694:SF41HOGENOM:HOG000241335InParanoid:F4I6G4
InterPro:IPR003347InterPro:IPR003349InterPro:IPR003888InterPro:IPR003889
InterPro:IPR004198iPTMnet:F4I6G4KEGG:ath:AT1G30810KO:K11446
OMA:VCPTDEVPaxDb:F4I6G4Pfam:F4I6G4Pfam:PF02373
Pfam:PF02375Pfam:PF02928Pfam:PF05964Pfam:PF05965
Pfscan:PS51183Pfscan:PS51184Pfscan:PS51542Pfscan:PS51543
PRIDE:F4I6G4PRO:PR:F4I6G4PROSITE:PS51183PROSITE:PS51184
PROSITE:PS51542PROSITE:PS51543ProteinModelPortal:F4I6G4Proteomes:UP000006548
RefSeq:NP_001185118.1RefSeq:NP_174367.6SMART:SM00541SMART:SM00542
SMART:SM00545SMART:SM00558SMR:F4I6G4STRING:3702.AT1G30810.1
SUPFAM:SSF51197TAIR:AT1G30810UniGene:At.27326UniGene:At.74914
UniProt:F4I6G4
Coordinates (TAIR10) chr1:-:10938139..10941505
Molecular Weight (calculated) 92813.40 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.52
Length 819 amino acids
Sequence (TAIR10)
(BLAST)
001: MENPPLESEI KEDMSLKNHP PDKDKDKDTI MEQPSSPRHR KVVARWLPDE AQRPIINDAP VFTPSLEEFV DPLAYIEKIR PLAEPYGICR IIPPSTWKPP
101: CRLKEKSIWE QTKFPTRIQT VDLLQNREPM KKKPKSRKRK RRRNSRMGSS KRRSGSSPAE STSSPEAEEK FGFNSGSDFT LDEFEKYALH FKDSYFEKKD
201: SGGDIVKWTP SVDDIEGEYW RIVEQPTDEV EVYYGADLEN GVLGSGFYKR AEKFTGSDME QYTLSGWNLN NLPRLPGSVL SFEDCDISGV LVPWLYVGMC
301: FSSFCWHVED HHLYSLNYHH FGEPKVWYGV PGSNATALEK AMRKHLPDLF EEQPDLLHGL VTQFSPSILK DEGVQAYRVV QNSGEYVLTF PRAYHAGFNC
401: GFNCAEAVNV APVDWLAHGQ NAVELYSKET RKTSLSHDKL LLGAAYEAVK ALWELSASEG KENTTNLRWK SFCGKNGTLT NAIQARLQME EGRITALGRD
501: SSSLKKMEKD FDSNCERECF SCFYDLHLSA SGCKCSPEEY ACLKHADDLC SCDVKDGFIL LRYTMDELSS LVRALEGESD DLKIWASKVL GIEHSDEDQT
601: KTSSVISEEK KLKEGSFDLN IDLEMDYQED VKEEASTSGG ELTASENLGV SVEPINLGFL IFGKLWCNKY AIFPKGFRSR VKFYNVLDPT RMSNYISEVL
701: DAGLMGPLFR VTLEESPDES FFNVSAQQCW EMVMRRVKDT STSLGLPILP QFESINGLQM FGFLSPSIVQ AIEALDPNHR LVEYWNHKNQ TSSDSKDHFI
801: SSNCSASLTK GKLFGVDLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)