AT1G76700.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.941 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G21080.1); Has 22668 Blast hits to 22554 proteins in 3188 species: Archae - 168; Bacteria - 9129; Metazoa - 3918; Fungi - 2179; Plants - 2304; Viruses - 20; Other Eukaryotes - 4950 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:28780619..28783022 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 44666.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.91 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 398 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVKETEYYDV LGVSPTATES EIKKAYYIKA RQVHPDKNPN DPQAAHNFQV LGEAYQVLSD SGQRQAYDAC GKSGISTDAI IDPAAIFAML FGSELFEGYI 101: GQLAMASMAS LDIFTEGDQF DTKKIQEKLR IVQKEREDKL AQILKDRLNE YVINKDEFIS NAEAEVARLS NAAYGVDMLN TIGYIYVRQA AKELGKKAIY 201: LGVPFIAEWF RNKGHFIKSQ LTAATGAYAL FQLQEEMKRQ LNTEGNYTEE ELEEYLQAHK RVMIDSLWKL NVADIEATLC RVCQLVLQDP EAKREELRTR 301: ARGLKALGRI FQRAKTASES DPLENSEPQK LNGNGKNHDE DTSTSPKSSE ASHSTSGPQE PQSPYVEEFK LGDEQFNYYF PRPAPPPGAG KYSSSGYD |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)