AT1G25682.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.970 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF572) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Family of unknown function (DUF572) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT1G25988.1); Has 717 Blast hits to 715 proteins in 213 species: Archae - 0; Bacteria - 6; Metazoa - 235; Fungi - 232; Plants - 115; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9002532..9004550 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35054.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.27 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||
| Length | 310 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTLSAARAD NFYYPPEWTP DQGSLNKFQG QHPLRERAKK IGEGILVIRF EMPYNIWCGG CSSMIAKGVR FNAEKKQVGN YYSTKIWSFA MKSPCCKHEI 101: VIQTDPQNCE YVITSGAQKK VEEYEAEDAE TMELTAEQEK GKLADPFYRL EHQEVDLQKK KAAEPLLVRL QRVSDARHAD DYSLNKALRA QLRRHRKRVA 201: EEETASRKLG LGIRLLPKSE EDIKAASNVK FKSKFDKNRK DKRALIHASS IFPESSYSSS KKRMELEAKR RKISAASASS LLRGGFKASS LSTNPSASKP 301: KVSSVSVRKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)