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AT1G49950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24397874 (2014): nucleus
  • PMID:19947985 (2010): nucleus nuclear matrix nucleolus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : telomere repeat binding factor 1
Curator
Summary (TAIR10)
Encodes a telomeric DNA binding protein. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.
Computational
Description (TAIR10)
telomere repeat binding factor 1 (TRB1); FUNCTIONS IN: DNA binding, protein homodimerization activity, sequence-specific DNA binding transcription factor activity, double-stranded telomeric DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: telomere repeat binding factor 3 (TAIR:AT3G49850.1); Has 1029 Blast hits to 1009 proteins in 184 species: Archae - 7; Bacteria - 85; Metazoa - 120; Fungi - 83; Plants - 636; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
BioGrid:26643eggNOG:ENOG410IHMFeggNOG:ENOG4111SQSEMBL:AC015445
EMBL:AY062736EMBL:AY087994EMBL:AY519539EMBL:BT009677
EMBL:CP002684EMBL:U83623EMBL:U83624EnsemblPlants:AT1G49950
EnsemblPlants:AT1G49950.1EnsemblPlants:AT1G49950.2EnsemblPlants:AT1G49950.3entrez:841418
Gene3D:1.10.10.10Gene3D:1.10.10.60GeneID:841418Genevisible:Q8VWK4
GO:GO:0000785GO:GO:0000786GO:GO:0003691GO:GO:0003700
GO:GO:0005634GO:GO:0005730GO:GO:0006334GO:GO:0006351
GO:GO:0006357GO:GO:0009651GO:GO:0009723GO:GO:0009733
GO:GO:0009737GO:GO:0009739GO:GO:0009751GO:GO:0009753
GO:GO:0033613GO:GO:0042803GO:GO:0046686GO:GO:0070491
GO:GO:1990841Gramene:AT1G49950.1Gramene:AT1G49950.2Gramene:AT1G49950.3
hmmpanther:PTHR21717hmmpanther:PTHR21717:SF27HOGENOM:HOG000238013InParanoid:Q8VWK4
IntAct:Q8VWK4InterPro:IPR001005InterPro:IPR005818InterPro:IPR009057
InterPro:IPR011991InterPro:IPR017930iPTMnet:Q8VWK4KEGG:ath:AT1G49950
KO:K09422MINT:MINT-1212432ncoils:CoilOMA:CKMMIRA
PaxDb:Q8VWK4Pfam:PF00249Pfam:PF00538Pfam:Q8VWK4
Pfscan:PS51294Pfscan:PS51504PhylomeDB:Q8VWK4PRIDE:Q8VWK4
PRO:PR:Q8VWK4PROSITE:PS51294PROSITE:PS51504ProteinModelPortal:Q8VWK4
Proteomes:UP000006548RefSeq:NP_564559.1RefSeq:NP_849789.1RefSeq:NP_973998.1
SMART:SM00526SMART:SM00717SMR:Q8VWK4STRING:3702.AT1G49950.1
SUPFAM:SSF46689SUPFAM:SSF46785TAIR:AT1G49950tair10-symbols:ATTRB1
tair10-symbols:TRB1UniGene:At.27250UniProt:Q8VWK4
Coordinates (TAIR10) chr1:-:18494439..18496713
Molecular Weight (calculated) 33018.40 Da
IEP (calculated) 9.91
GRAVY (calculated) -0.62
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAPKQKWTQ EEESALKSGV IKHGPGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA NGWGSREKSR LAVKRTFSLP KQEENSLALT NSLQSDEENV
101: DATSGLQVSS NPPPRRPNVR LDSLIMEAIA TLKEPGGCNK TTIGAYIEDQ YHAPPDFKRL LSTKLKYLTS CGKLVKVKRK YRIPNSTPLS SHRRKGLGVF
201: GGKQRTSSLP SPKTDIDEVN FQTRSQIDTE IARMKSMNVH EAAAVAAQAV AEAEAAMAEA EEAAKEAEAA EAEAEAAQAF AEEASKTLKG RNICKMMIRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)