AT4G25210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-binding storekeeper protein-related transcriptional regulator | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00130.1); Has 6385 Blast hits to 3618 proteins in 495 species: Archae - 4; Bacteria - 719; Metazoa - 1874; Fungi - 800; Plants - 494; Viruses - 72; Other Eukaryotes - 2422 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12918446..12919552 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40276.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.10 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 368 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPKKAEEVV ESPPVSSEEE ESGSSGEESE SSAEVPKKVE SSQKPESDSE GESESESSSG PEPESEPAKT IKLKPVGTKP IPETSGSAAT VPESSTAKRP 101: LKEAAPEAIK KQKTSDTEHV KKPITNDEVK KISSEDAKKM FQRLFSETDE IALLQGIIDF TSTKGDPYED IDAFCIYVKK LIDFDATKNQ IVTKLQRLKK 201: KFNNAVKNSL KKGKTEDDIE FAKDLEQKGF ELSRKIWGSN GVLVTGKSSR KKVGGTPAPK EMKLVAHSTP KKQQEEAKKP ERTEAKVVNT GLSIGKEIAS 301: FLNADNGSSC GLDESTLTAV WAKVADGAEK REVEEKWKKL KAKQFELCLQ RSGLVNETAK MIFKAYES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)