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AT2G04520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.741
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A), conserved site (InterPro:IPR018104), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G35680.2); Has 921 Blast hits to 921 proteins in 273 species: Archae - 305; Bacteria - 0; Metazoa - 209; Fungi - 83; Plants - 55; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0361eggNOG:KOG3403EMBL:AC006951EMBL:AY088924
EMBL:CP002685EnsemblPlants:AT2G04520EnsemblPlants:AT2G04520.1entrez:814994
Gene3D:2.40.50.140GeneID:814994GO:GO:0003743GO:GO:0005829
Gramene:AT2G04520.1HAMAP:MF_00216hmmpanther:PTHR21668hmmpanther:PTHR21668:SF5
InterPro:IPR001253InterPro:IPR006196InterPro:IPR012340InterPro:IPR018104
KEGG:ath:AT2G04520KO:K03236OMA:VIMKYSAPANTHER:PTHR21668
Pfam:PF01176Pfscan:PS50832PhylomeDB:Q9SJB9PIR:D84458
ProDom:PD005579PROSITE:PS01262PROSITE:PS50832Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702
RefSeq:NP_178531.1scanprosite:PS01262SMART:SM00652SMR:Q9SJB9
STRING:3702.AT2G04520.1SUPFAM:SSF50249TAIR:AT2G04520TIGRfam:TIGR00523
TIGRFAMs:TIGR00523UniGene:At.14182UniProt:Q9SJB9
Coordinates (TAIR10) chr2:-:1574802..1575239
Molecular Weight (calculated) 16638.60 Da
IEP (calculated) 4.59
GRAVY (calculated) -0.97
Length 145 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKNKGKGGK NRKRGKNEAD DEKRELIFKE DGQEYAQVLR MLGNGRCEAM CIDGTKRLCH IRGKMHKKVW IAAGDIVLVG LRDYQDDKAD VILKYMSDEA
101: RLLKAYGELP ENTRLNEGIV GDLEDDDDNN DDDYVEFEDE DIDRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)