AT2G04520.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.741 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Nucleic acid-binding, OB-fold-like protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A), conserved site (InterPro:IPR018104), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G35680.2); Has 921 Blast hits to 921 proteins in 273 species: Archae - 305; Bacteria - 0; Metazoa - 209; Fungi - 83; Plants - 55; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:1574802..1575239 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 16638.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.59 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 145 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MPKNKGKGGK NRKRGKNEAD DEKRELIFKE DGQEYAQVLR MLGNGRCEAM CIDGTKRLCH IRGKMHKKVW IAAGDIVLVG LRDYQDDKAD VILKYMSDEA 101: RLLKAYGELP ENTRLNEGIV GDLEDDDDNN DDDYVEFEDE DIDRI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)