AT5G67630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: DNA helicase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TIP49, C-terminal (InterPro:IPR010339), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G49830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:26967535..26969306 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52117.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.24 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 469 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAELKLSESR DLTRVERIGA HSHIRGLGLD SALEPRAVSE GMVGQVKARK AAGVILQMIR EGKIAGRAIL IAGQPGTGKT AIAMGMAKSL GLETPFAMIA 101: GSEIFSLEMS KTEALTQSFR KAIGVRIKEE TEVIEGEVVE VQIDRPASSG VASKSGKMTM KTTDMETVYD MGAKMIEALN KEKVQSGDVI AIDKATGKIT 201: KLGRSFSRSR DYDAMGAQTK FVQCPEGELQ KRKEVVHCVT LHEIDVINSR TQGFLALFTG DTGEIRSEVR EQIDTKVAEW REEGKAEIVP GVLFIDEVHM 301: LDIECFSFLN RALENEMSPI LVVATNRGVT TIRGTNQKSP HGIPIDLLDR LLIITTQPYT DDDIRKILEI RCQEEDVEMN EEAKQLLTLI GRDTSLRYAI 401: HLITAAALSC QKRKGKVVEV EDIQRVYRLF LDVRRSMQYL VEYQSQYMFS EPIKNDEAAA EDEQDAMQI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)