AT5G06310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.937 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleic acid-binding, OB-fold-like protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes AtPOT1b. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
protection of telomeres 1b (AtPOT1b); FUNCTIONS IN: DNA binding; INVOLVED IN: telomere maintenance; LOCATED IN: nuclear chromosome, telomeric region; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Telomere end binding protein (InterPro:IPR011564); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G05210.3); Has 198 Blast hits to 197 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1928468..1930795 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52574.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 454 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEERRDDYK FLRIQDAFKA LHLHVNLIGV IVELGFSNGS DCSCTLKIVD PWYSGSGLPV KFVARTIRDL PRVESIGDII LLSRVKIVLI NRKITALCNE 101: TTSSSFALFN GKHSVDSIPY QSSPKFLMRE QDKNFLSNLR EWMITYKFED GSCCFTSLKD IKEGECSNLS CQIVHISKVY KDRWYLFVWD GTEMPPCNIL 201: VKSERLPLCV EPEMLPTYML RKFPTFGSVL RIIVDRVSEK QAIHCLQPGQ HVKLLNLFFQ VNMGLWNATF TPSTKMQYTM SREMEAFSPQ RMCGEKFSPR 301: WNPIARCISR SHSEITGVAH DDAPFVSLMD ILTYHNVTAK FRCVVRFIQV YPRDVRKLRD INGNIKLVAI LEDATARIHA SLYADEGEKF FGCDESDEEA 401: LVKKLNRLLG GEEMEKVPRN PPWVQCCLFS FYKHKMDQWE SRRFRIFDTW INAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)