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AT3G60260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.291
cytosol 0.253
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ELMO/CED-12 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ELMO/CED-12 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment/cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT2G44770.1); Has 836 Blast hits to 836 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 495; Fungi - 36; Plants - 182; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Protein Annotations
DNASU:825197eggNOG:ENOG410XRXCeggNOG:KOG2998EMBL:AY065185
EMBL:AY081664EMBL:AY084338EMBL:CP002686EnsemblPlants:AT3G60260
EnsemblPlants:AT3G60260.1EnsemblPlants:AT3G60260.2EnsemblPlants:AT3G60260.4entrez:825197
ExpressionAtlas:Q8VZ78GeneID:825197Gramene:AT3G60260.1Gramene:AT3G60260.2
Gramene:AT3G60260.4hmmpanther:PTHR12771hmmpanther:PTHR12771:SF20HOGENOM:HOG000236367
InterPro:IPR006816OMA:NQWLAMRPfam:PF04727Pfscan:PS51335
PhylomeDB:Q8VZ78PROSITE:PS51335Proteomes:UP000006548RefSeq:NP_001078320.1
RefSeq:NP_567097.1RefSeq:NP_850727.1STRING:3702.AT3G60260.1TAIR:AT3G60260
UniGene:At.23351UniProt:Q8VZ78
Coordinates (TAIR10) chr3:+:22274303..22276839
Molecular Weight (calculated) 30256.20 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.23
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDRGGSFVA VRRISQGLER GSVYHSSSAE VVAGSAAWLG RGLSCVCVQG RDGDPRPSFD LTPAQEECLQ RLQSRIDVAY DSSIPQHQEA LKDLWKLAFP
101: EEELHGIVSD QWKEMGWQGK DPSTDFRGGG FISLENLLYF ARKFPKSFHG LLRKQVGDRS VWEYPFAVAG INITFMLIQM LDLEAVKPRS IVGETFLRFL
201: SVNESAFDLL YCIAFKLMDQ QWLSMRASYM EFNTVMKSTR RQLEREIMIE DITSLEDLPS YSLLSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)