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AT2G17830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.628
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G42460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:AY219091EMBL:AY219092EMBL:CP002685EnsemblPlants:AT2G17830
EnsemblPlants:AT2G17830.1entrez:816292ExpressionAtlas:Q84X17GeneID:816292
Genevisible:Q84X17hmmpanther:PTHR32133hmmpanther:PTHR32133:SF120HOGENOM:HOG000112505
InParanoid:Q84X17InterPro:IPR001810InterPro:IPR006527InterPro:IPR011043
InterPro:IPR017451KEGG:ath:AT2G17830PaxDb:Q84X17Pfam:PF00646
Pfam:PF07734Pfam:Q84X17Pfscan:PS50181PhylomeDB:Q84X17
PIR:T00841PRIDE:Q058M6PRIDE:Q84X17PRO:PR:Q84X17
PROSITE:PS50181ProteinModelPortal:Q84X17Proteomes:UP000006548RefSeq:NP_179373.2
SMART:SM00256SMR:Q84X17STRING:3702.AT2G17830.1SUPFAM:0047741
SUPFAM:SSF50965SUPFAM:SSF81383TAIR:AT2G17830TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.19461UniGene:At.40094UniGene:At.70517
UniProt:Q058M6UniProt:Q84X17
Coordinates (TAIR10) chr2:+:7754261..7755445
Molecular Weight (calculated) 46015.80 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.29
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIMSDLPRD LLAEILSRVP LASLRSVRFT CKKWNDLSKD RSFLKKQIVE AKKKQLKSKE FEVIMMRNFR VYLTSVDLHN DVNPSFTPKG TLTSFSDDAN
101: QHQVDNVSSV FHCDGLLLCI TKDLNFRLVV WNPYFGQTRW IQPRNSYHIK DIYAIGYDEN KNHKILRLKD QYYDYDSHPR ARICEFELYS FESNSWKVVL
201: DVSPDWYIHS YHRGLSVKGN TYWYATEKHG YVNFLICFDF TTEKFGPRLP LPFNATESFT YDDVVTLSSV GEEQLALLFQ SDATLMMEIW VTSKVDPTEV
301: LWNKLFLAVD HDMIEFDYEL KFVADAGSFF IDQKKNVVVV FDKDMNEHTH RGMAYIVGKN GYFKRVDIGE EAYTSCFPLV CSYVPSSVQI RQLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)