AT2G17830.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.628 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box and associated interaction domains-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G42460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:7754261..7755445 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 46015.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 394 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAIMSDLPRD LLAEILSRVP LASLRSVRFT CKKWNDLSKD RSFLKKQIVE AKKKQLKSKE FEVIMMRNFR VYLTSVDLHN DVNPSFTPKG TLTSFSDDAN 101: QHQVDNVSSV FHCDGLLLCI TKDLNFRLVV WNPYFGQTRW IQPRNSYHIK DIYAIGYDEN KNHKILRLKD QYYDYDSHPR ARICEFELYS FESNSWKVVL 201: DVSPDWYIHS YHRGLSVKGN TYWYATEKHG YVNFLICFDF TTEKFGPRLP LPFNATESFT YDDVVTLSSV GEEQLALLFQ SDATLMMEIW VTSKVDPTEV 301: LWNKLFLAVD HDMIEFDYEL KFVADAGSFF IDQKKNVVVV FDKDMNEHTH RGMAYIVGKN GYFKRVDIGE EAYTSCFPLV CSYVPSSVQI RQLT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)