AT5G08780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : winged-helix DNA-binding transcription factor family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT3G18035.1); Has 303 Blast hits to 293 proteins in 77 species: Archae - 3; Bacteria - 18; Metazoa - 36; Fungi - 11; Plants - 191; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2856782..2858810 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51323.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.52 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||
| Length | 457 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAASATLMSM AHERKVENLR GFMVNLANSR DFSLPETKLF QQKFLDLCLS RTPDHPTYSA MIFIAIMDLN KEGGASEDAI SEFIKSKYKN LPFAHTNLLS 101: HHLAKLVEKR EILCDCNNDC YSLPGEKKTV ASTDVQRKSD LITVRTNDQR AADEVMTCQN KEESVEILKS GDPKVVLLEE QSLTKSRTGS KRKACCVINV 201: IEVMDTEDNG FKAGLRDSTV QIPRKEGVVE VVDVENSENE ARIEANSRGG ELYEVAVLYK QNDVLMEESG KEAMETSSIV RKAKLRRTSN TTKENVEVTS 301: EAYKKLWECQ TEACSNIIAL EKMLKQCKEK DQQNKAVSEI DDVSRLPLSM ESCRELWKAA QKLQSQLSEI IDSCDETVVP YSVSPGCELE GISKGLCKED 401: PKMKTPRGNN GSEKPSTQLE QKEREKSSKK KPQVKKTRIK SLRDIGITAV RKSPRFS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)