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AT4G15570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.510
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.
Computational
Description (TAIR10)
MAGATAMA 3 (MAA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen-pistil interaction, pollen tube guidance, embryo sac development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G16800.1); Has 6636 Blast hits to 6003 proteins in 1303 species: Archae - 237; Bacteria - 1922; Metazoa - 1300; Fungi - 1113; Plants - 639; Viruses - 442; Other Eukaryotes - 983 (source: NCBI BLink).
Protein Annotations
EC:3.6.4.-eggNOG:COG1112eggNOG:KOG1801EMBL:AL161542
EMBL:CP002687EMBL:EU915246EMBL:Z97339EnsemblPlants:AT4G15570
EnsemblPlants:AT4G15570.1entrez:827233Gene3D:3.40.50.300GeneID:827233
Genevisible:B6SFA4GO:GO:0004386GO:GO:0005524GO:GO:0005634
GO:GO:0009553GO:GO:0009875GO:GO:0010183Gramene:AT4G15570.1
hmmpanther:PTHR10887hmmpanther:PTHR10887:SF369HOGENOM:HOG000030627InParanoid:B6SFA4
InterPro:IPR027417iPTMnet:B6SFA4KEGG:ath:AT4G15570KO:K10706
ncoils:CoilOMA:EKDICIFPaxDb:B6SFA4Pfam:B6SFA4
Pfam:PF13086Pfam:PF13087PhylomeDB:B6SFA4PIR:E71420
PRIDE:B6SFA4PRO:PR:B6SFA4ProteinModelPortal:B6SFA4Proteomes:UP000006548
RefSeq:NP_193292.3SMR:B6SFA4STRING:3702.AT4G15570.1SUPFAM:SSF52540
TAIR:AT4G15570tair10-symbols:MAA3UniGene:At.33168UniProt:B6SFA4
Coordinates (TAIR10) chr4:+:8893043..8898858
Molecular Weight (calculated) 91544.70 Da
IEP (calculated) 5.45
GRAVY (calculated) -0.38
Length 818 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIDNGKLQE EEASSVTRFY NIILGWDYKQ LTKENERKNR KDSKEKLNVV KNTYKDVDDY FETFEPLLFE EVKAQILQNK DGEEASVCKM RLVMECNEGE
101: GFHFLLVTYE HEEDEYLAQN DLLLLSKEEV KGNSFPSSYG FAVVEHRQNN LLRLRMYLAE DIVQITKNTK SSRTKSFIQA LSNMRSLITS SASPIDKRVF
201: SLKLCGLSTI IREYIALRSV SSLPFKDLIF TAAEKSCGFG DEAWKISGPL NEFFNENLNK SQKEAIDVGL SRKSFVLIQG PPGTGKTQTI LSILGAIMHA
301: TPARVQSKGT DHEVKRGIQM TIQEKYNHWG RASPWILGVN PRDAIMPEDG DDGFFPTSGN ELKPEVVNAS RKYRLRVLVC APSNSALDEI VLRLLSSGLR
401: DENAQTYTPK IVRIGLKAHH SVASVSLDHL VAQKRGSAID KPKQGTTGTD IDSIRTAILE EAAIVFATLS FSGSALLAKS NRGFDVVIID EAAQAVEPAT
501: LIPLATRCKQ VFLVGDPKQL PATVISTVAQ DSGYGTSMFE RLQKAGYPVK MLKTQYRMHP EIRSFPSKQF YEGALEDGSD IEAQTTRDWH KYRCFGPFCF
601: FDIHEGKESQ HPGATGSRVN LDEVEFVLLI YHRLVTMYPE LKSSSQLAII SPYNYQVKTF KDRFKEMFGT EAEKVVDINT VDGFQGREKD VAIFSCVRAN
701: ENGQIGFLSN SRRMNVGITR AKSSVLVVGS AATLKSDPLW KNLIESAEQR NRLFKVSKPL NNFFSEENLE TMKLTEDMEI PDAPLYEDES LPVAPYGGDD
801: DFGDGDADQD DVAMAGED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)