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AT1G18090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 5'-3' exonuclease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 2134 Blast hits to 2045 proteins in 397 species: Archae - 265; Bacteria - 69; Metazoa - 518; Fungi - 574; Plants - 189; Viruses - 16; Other Eukaryotes - 503 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1395-MONOMEReggNOG:COG0258eggNOG:KOG2518EMBL:AY050420
EMBL:AY113038EMBL:CP002684EnsemblPlants:AT1G18090EnsemblPlants:AT1G18090.1
entrez:838389ExpressionAtlas:Q94A33Gene3D:3.40.50.1010GeneID:838389
GO:GO:0003677GO:GO:0004527GO:GO:0005634GO:GO:0006281
Gramene:AT1G18090.1hmmpanther:PTHR11081hmmpanther:PTHR11081:SF27HOGENOM:HOG000131774
InterPro:IPR006084InterPro:IPR006085InterPro:IPR006086InterPro:IPR008918
InterPro:IPR019974InterPro:IPR020045InterPro:IPR029060KEGG:ath:AT1G18090
KO:K10746OMA:CKAVIFKPANTHER:PTHR11081Pfam:PF00752
Pfam:PF00867PhylomeDB:Q94A33PRINTS:PR00853PROSITE:PS00842
Proteomes:UP000006548Reactome:R-ATH-5358565RefSeq:NP_564047.1scanprosite:PS00842
SMART:SM00279SMART:SM00484SMART:SM00485SMR:Q94A33
STRING:3702.AT1G18090.1SUPFAM:SSF47807SUPFAM:SSF88723TAIR:AT1G18090
UniGene:At.48205UniGene:At.70260UniProt:Q94A33
Coordinates (TAIR10) chr1:+:6224539..6227715
Molecular Weight (calculated) 64781.80 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.33
Length 577 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIKDLLRFM KPYILPIHIQ KYAGKRVGID AYSWLHKGAY SCSMELCLDT DGKKKLRYID YFMHRVNLLQ HYEIIPVVVL DGGNMPCKAA TGDERHRKRK
101: ANFDAAMVKL KEGNVAAATE LFQRAVSVTS SMAHQLIQVL KSENVEFIVA PYEADAQLAY LSSLELEQGG IAAVITEDSD LLAYGCKAVI FKMDRYGKGE
201: ELVLDNVFQA VDQKPSFQNF DQELFTAMCV LAGCDFLPSV PGVGISRAHA FISKYQSVEL VLSFLKTKKG KLVPDDYSSS FTEAVSVFQH ARVYDFDAKK
301: LKHLKPLSHN LLNLPVEQLE FLGPDLSPSV AVAIAEGNVD PITMKAFNHF SVSRKPLKTP VRSFKEQEKG SSFLVCSLSK SEEIIELKRT ADEAMIDPEA
401: IVKKKMYSKQ DSDLYKLLAQ PNRDQVVTRP SNPSLIPDNN PFKIRKTDEI NLEIAEYGVQ ELADSFVTKS KAVDVASSSP NSHEHEDQKE CVTIDLSKLD
501: AAGIKQDSEK NRVKETFETT EVDLAEVQDH VNMTTKRVRG TKPRTENFKV KTSCKSSENN KTIIKKKHSI LDFFQRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)