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AT2G41850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:24030099 (2013): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polygalacturonase abscission zone A. thaliana
Curator
Summary (TAIR10)
ADPG2.
Computational
Description (TAIR10)
polygalacturonase abscission zone A. thaliana (PGAZAT); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: cell wall modification involved in abscission, fruit dehiscence, floral organ abscission, anther dehiscence, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G57510.1); Has 4465 Blast hits to 4447 proteins in 569 species: Archae - 8; Bacteria - 1510; Metazoa - 14; Fungi - 1290; Plants - 1500; Viruses - 5; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G41850-MONOMERCAZy:GH28EC:3.2.1.15eggNOG:COG5434
eggNOG:ENOG410IF8FEMBL:AC002339EMBL:AF083793EMBL:AY078936
EMBL:CP002685EnsemblPlants:AT2G41850EnsemblPlants:AT2G41850.1entrez:818785
Gene3D:2.160.20.10GeneID:818785Genevisible:Q8RY29GO:GO:0004650
GO:GO:0005576GO:GO:0005618GO:GO:0005975GO:GO:0009830
GO:GO:0009901GO:GO:0010047GO:GO:0010227Gramene:AT2G41850.1
gramene_pathway:3.2.1.15gramene_pathway:PWY-1081HOGENOM:HOG000237792InParanoid:Q8RY29
InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050InterPro:IPR012334
KEGG:ath:AT2G41850OMA:IKLMIEGPaxDb:Q8RY29Pfam:PF00295
Pfam:Q8RY29PhylomeDB:Q8RY29PIR:H84846PRIDE:Q8RY29
PRO:PR:Q8RY29PROSITE:PS00502ProteinModelPortal:Q8RY29Proteomes:UP000006548
RefSeq:NP_850359.1scanprosite:PS00502SMART:SM00710SMR:Q8RY29
STRING:3702.AT2G41850.1SUPFAM:SSF51126TAIR:AT2G41850tair10-symbols:ADPG2
tair10-symbols:PGAZATTMHMM:TMhelixUniGene:At.42781UniProt:Q8RY29
Coordinates (TAIR10) chr2:-:17461918..17464059
Molecular Weight (calculated) 46625.20 Da
IEP (calculated) 8.87
GRAVY (calculated) -0.27
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MARCTNLVTV FLLWALLMFS WCKASRISPN VYDHSYKRFK SDSLIKRRED ITGLRSFVRA SLRTPTTVSV SDFGAKGDGK TDDTQAFVNA WKKACSSNGA
101: VNLLVPKGNT YLLKSIQLTG PCNSILTVQI FGTLSASQKR SDYKDISKWI MFDGVNNLSV DGGDTGVVDG NGETWWQNSC KRNKAKPCTK APTALTFYNS
201: KSLIVKNLKV RNAQQIQISI EKCSNVQVSN VVVTAPADSP NTDGIHITNT QNIRVSESII GTGDDCISIE SGSQNVQIND ITCGPGHGIS IGSLGDDNSK
301: AFVSGVTVDG AKLSGTDNGV RIKTYQGGSG TASNIIFQNI QMDNVKNPII IDQDYCDKSK CTTEKSAVQV KNVVYRDISG TSASENAITF NCSKNYPCQG
401: IVLDRVNIKG GKATCTNANV VDKGAVLPQC NST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)