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AT4G23560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase 9B15
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyl hydrolase 9B15 (GH9B15); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B14 (TAIR:AT4G09740.1); Has 1874 Blast hits to 1863 proteins in 270 species: Archae - 2; Bacteria - 707; Metazoa - 184; Fungi - 17; Plants - 921; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G23560-MONOMERBioGrid:13745CAZy:GH9EC:3.2.1.4
eggNOG:ENOG410IHSNeggNOG:ENOG410ZZU6EMBL:AL035394EMBL:AL161559
EMBL:CP002687EnsemblPlants:AT4G23560EnsemblPlants:AT4G23560.1entrez:828456
Gene3D:1.50.10.10GeneID:828456Genevisible:Q9SUS0GO:GO:0005576
GO:GO:0008810GO:GO:0030245GO:GO:0071555Gramene:AT4G23560.1
gramene_pathway:3.2.1.4gramene_pathway:PWY-1001hmmpanther:PTHR22298hmmpanther:PTHR22298:SF22
HOGENOM:HOG000021033InParanoid:Q9SUS0InterPro:IPR001701InterPro:IPR008928
InterPro:IPR012341InterPro:IPR018221InterPro:IPR033126KEGG:00500+3.2.1.4
KEGG:ath:AT4G23560OMA:FGWPMAFPaxDb:Q9SUS0Pfam:PF00759
Pfam:Q9SUS0PhylomeDB:Q9SUS0PIR:T05588PRIDE:Q9SUS0
PRO:PR:Q9SUS0PROSITE:PS00592PROSITE:PS00698ProteinModelPortal:Q9SUS0
Proteomes:UP000006548RefSeq:NP_194087.1scanprosite:PS00592scanprosite:PS00698
SMR:Q9SUS0STRING:3702.AT4G23560.1SUPFAM:SSF48208TAIR:AT4G23560
tair10-symbols:AtGH9B15tair10-symbols:GH9B15UniGene:At.23383UniGene:At.5403
UniProt:Q9SUS0
Coordinates (TAIR10) chr4:-:12293633..12295788
Molecular Weight (calculated) 52452.40 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.23
Length 479 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKLLVLMLV GMFLAFESLE ALEYGDALNK SILFFEGQRS GKLPTNQRVK WRADSALSDG SLANVNLIGG YYDAGDNVKF VWPMSFTTTL LSWAAIEYQN
101: EISSVNQLGY LRSTIKWGTD FILRAHTSPN MLYTQVGDGN SDHSCWERPE DMDTSRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKSVDS TYSSTLLNHA
201: KTLFEFADKY RGSYQASCPF YCSYSGYQDE LLWAAAWLYK ATGDKIYINY VISNKDWSQA VNEFSWDNKF VGAQALLVSE FYNGANDLAK FKSDVESFVC
301: AMMPGSSSQQ IKPTPGGLLF IRDSSNLQYV TTATTVLFHY SKTLTKAGVG SIQCGSTKFT VSQIRNFAKS QVDYILGNNP MKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGY SYYNSDTPNP NVHIGAIVGG PNSSDQYSDK KSDYSHAEPT TYINAAFIGP VAALISSSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)