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AT3G20210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : delta vacuolar processing enzyme
Curator
Summary (TAIR10)
Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.
Computational
Description (TAIR10)
delta vacuolar processing enzyme (DELTA-VPE); CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: gamma vacuolar processing enzyme (TAIR:AT4G32940.1); Has 783 Blast hits to 781 proteins in 238 species: Archae - 4; Bacteria - 12; Metazoa - 279; Fungi - 115; Plants - 249; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G20210-MONOMERBioCyc:ARA:GQT-1105-MONOMEREC:3.4.22.34eggNOG:COG5206
eggNOG:KOG1348EMBL:AB105106EMBL:AF521661EMBL:AK221840
EMBL:AP000383EMBL:AY084227EMBL:AY120765EMBL:BT000949
EMBL:CP002686EnsemblPlants:AT3G20210EnsemblPlants:AT3G20210.1EnsemblPlants:AT3G20210.2
entrez:821565ExpressionAtlas:Q9LJX8GeneID:821565Genevisible:Q9LJX8
GO:GO:0000326GO:GO:0004197GO:GO:0005615GO:GO:0006624
GO:GO:0009505GO:GO:0010214GO:GO:0012501GO:GO:0051603
hmmpanther:PTHR12000hmmpanther:PTHR12000:SF14HOGENOM:HOG000236335InterPro:IPR001096
KEGG:ath:AT3G20210KO:K01369MEROPS:C13.A01OMA:LHDMSKE
PANTHER:PTHR12000PaxDb:Q9LJX8Pfam:PF01650Pfam:Q9LJX8
PhylomeDB:Q9LJX8PIRSF:PIRSF019663PRIDE:Q9LJX8PRINTS:PR00776
PRO:PR:Q9LJX8ProteinModelPortal:Q9LJX8Proteomes:UP000006548RefSeq:NP_001189938.1
RefSeq:NP_188656.1SMR:Q9LJX8STRING:3702.AT3G20210.2TAIR:AT3G20210
tair10-symbols:DELTA-VPEtair10-symbols:DELTAVPEUniGene:At.26916UniProt:Q9LJX8
Coordinates (TAIR10) chr3:+:7052482..7054525
Molecular Weight (calculated) 52087.80 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.42
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPLGHFQI LVFLHALLIF SAESRKTQLL NDNDVESSDK SAKGTRWAVL VAGSNEYYNY RHQADICHAY QILRKGGLKD ENIIVFMYDD IAFSSENPRP
101: GVIINKPDGE DVYKGVPKDY TKEAVNVQNF YNVLLGNESG VTGGNGKVVK SGPNDNIFIY YADHGAPGLI AMPTGDEVMA KDFNEVLEKM HKRKKYNKMV
201: IYVEACESGS MFEGILKKNL NIYAVTAANS KESSWGVYCP ESYPPPPSEI GTCLGDTFSI SWLEDSDLHD MSKETLEQQY HVVKRRVGSD VPETSHVCRF
301: GTEKMLKDYL SSYIGRNPEN DNFTFTESFS SPISNSGLVN PRDIPLLYLQ RKIQKAPMGS LESKEAQKKL LDEKNHRKQI DQSITDILRL SVKQTNVLNL
401: LTSTRTTGQP LVDDWDCFKT LVNSFKNHCG ATVHYGLKYT GALANICNMG VDVKQTVSAI EQACSM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)