AT2G28490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RmlC-like cupins superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G18540.1); Has 66502 Blast hits to 16031 proteins in 1327 species: Archae - 49; Bacteria - 29374; Metazoa - 18792; Fungi - 2857; Plants - 8517; Viruses - 833; Other Eukaryotes - 6080 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:12178812..12180983 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55708.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.08 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||
| Length | 511 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKNKRAIGF LLLVVLINGV MMTRSNGYEG EEEWGGAGGG EWGGAEGGGA WGGGGGGGGA WGGEGEGGGE WGGGGEGGGG GRRGWFMMRE SRQVIKSEGG 101: EMRVVLSPRG RIIEKPMHIG FLTMEPKTLF VPQYLDSSLL IFIRQGEATL GVICKDEFGE RKLKAGDIYW IPAGSVFYLH NTGLGQRLHV ICSIDPTQSL 201: GFETFQPFYI GGGPSSVLAG FDPHTLTSAF NVSLPELQQM MMSQFRGPIV YVTEGPQPQP QSTVWTQFLG LRGEEKHKQL KKLLETKQGS PQDQQYSSGW 301: SWRNIVRSIL DLTEEKNKGS GSSECEDSYN IYDKKDKPSF DNKYGWSIAL DYDDYKPLKH SGIGVYLVNL TAGAMMAPHM NPTATEYGIV LAGSGEIQVV 401: FPNGTSAMNT RVSVGDVFWI PRYFAFCQIA SRTGPFEFVG FTTSAHKNRP QFLVGSNSLL RTLNLTSLSI AFGVDEETMR RFIEAQREAV ILPTPAAAPP 501: HVGEMVSDRF V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)