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AT4G28520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.757
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cruciferin 3
Curator
Summary (TAIR10)
Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
Computational
Description (TAIR10)
cruciferin 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus, embryo development ending in seed dormancy; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3); Has 6518 Blast hits to 3043 proteins in 462 species: Archae - 6; Bacteria - 857; Metazoa - 718; Fungi - 277; Plants - 2299; Viruses - 10; Other Eukaryotes - 2351 (source: NCBI BLink).
Protein Annotations
BioGrid:14257eggNOG:ENOG410IHSEeggNOG:ENOG410YATHEMBL:AK221187
EMBL:AK318733EMBL:AL021749EMBL:AL161573EMBL:AY090342
EMBL:BT002273EMBL:CP002687EMBL:U66916EMBL:Z17616
EMBL:Z17659EMBL:Z27261EnsemblPlants:AT4G28520EnsemblPlants:AT4G28520.1
entrez:828970ExpressionAtlas:Q96318Gene3D:2.60.120.10GeneID:828970
Genevisible:Q96318GO:GO:0000326GO:GO:0009735GO:GO:0009737
GO:GO:0010431GO:GO:0045735GO:GO:0071215hmmpanther:PTHR31189
hmmpanther:PTHR31189:SF1InParanoid:Q96318InterPro:IPR006044InterPro:IPR006045
InterPro:IPR011051InterPro:IPR014710InterPro:IPR022379iPTMnet:Q96318
KEGG:ath:AT4G28520ncoils:CoilOMA:GQPWEGQPaxDb:Q96318
Pfam:PF00190Pfam:Q96318PhylomeDB:Q96318PIR:T04623
PRIDE:Q96318PRINTS:PR00439PRO:PR:Q96318PROSITE:PS00305
ProteinModelPortal:Q96318Proteomes:UP000006548RefSeq:NP_001078459.1RefSeq:NP_194581.1
RefSeq:NP_849464.1scanprosite:PS00305SMART:SM00835SMR:Q96318
STRING:3702.AT4G28520.1SUPFAM:SSF51182TAIR:AT4G28520tair10-symbols:CRC
tair10-symbols:CRU3UniGene:At.21702UniProt:Q96318
Coordinates (TAIR10) chr4:+:14087596..14089617
Molecular Weight (calculated) 58238.80 Da
IEP (calculated) 7.00
GRAVY (calculated) -0.58
Length 524 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKLSNLLVA TFGVLLVLNG CLARQSLGVP PQLQNECNLD NLDVLQATET IKSEAGQIEY WDHNHPQLRC VGVSVARYVI EQGGLYLPTF FTSPKISYVV
101: QGTGISGRVV PGCAETFMDS QPMQGQQQGQ PWQGRQGQQG QPWEGQGQQG QQGRQGQPWE GQGQQGQQGR QGQQGQPWEG QGQQGQQGFR DMHQKVEHVR
201: RGDVFANTPG SAHWIYNSGE QPLVIIALLD IANYQNQLDR NPRVFHLAGN NQQGGFGGSQ QQQEQKNLWS GFDAQVIAQA LKIDVQLAQQ LQNQQDSRGN
301: IVRVKGPFQV VRPPLRQPYE SEEWRHPRSP QGNGLEETIC SMRSHENIDD PARADVYKPS LGRVTSVNSY TLPILEYVRL SATRGVLQGN AMVLPKYNMN
401: ANEILYCTGG QGRIQVVNDN GQNVLDQQVQ KGQLVVIPQG FAYVVQSHGN KFEWISFKTN ENAMISTLAG RTSLLRALPL EVISNGFQIS PEEARKIKFN
501: TLETTLTRAA GRQQQQLIEE IVEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)