AT3G21380.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.526 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Mannose-binding lectin superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 1897 Blast hits to 750 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1886; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:7528478..7530457 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 49726.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.47 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 460 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAAATMSWDD GKHMKVKRVQ ITYEDVINSI EAEYDGDTHN PHHHGTPGKK SDGVSLSPDE YITDVTGYYK TTGAEDAIAA LAFKTNKTEY GPYGNKTRNQ 101: FSIHAPKDNQ IAGFQGISSN VLNSIDVHFA PLPSSSSSSS SLSQANKVDA QGGKGGTSWD DGAHDHVRRV YIGQGDSGVT YVKFEYEKDD KKESREHGKK 201: TLLGAEVFEV DPDDYITSVE VQSDRIFGQD TEVITSLIFK TSKGKFSPPF GLEGSQKYEL KDKNGGKLVG FHGRVGGELL NALGAYFAPS SGRGTPSATQ 301: PPGSAQPTGS AGAKKLEAKG GNVGNPWDDG PHEGVRKVYI GQGDSGVSYV KFVYDKDSKE VPGNDHGKRT LLAPEEFLLE YPNEYITSVE LNYDKIFGTE 401: GEIITMLRFT TNKRTSPPFG LEGAKSVLLK EDGHKIVGFH GKAGADIIHQ VGVHVKPISK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)