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AT3G21380.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.526
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mannose-binding lectin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 1897 Blast hits to 750 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1886; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSEUeggNOG:ENOG41108VIEMBL:AK221897EMBL:AK229853
EMBL:AP001305EMBL:BT010454EMBL:CP002686EnsemblPlants:AT3G21380
EnsemblPlants:AT3G21380.1entrez:821692Gene3D:2.100.10.30GeneID:821692
Genevisible:Q9LIF8GO:GO:0030246Gramene:AT3G21380.1hmmpanther:PTHR23244
hmmpanther:PTHR23244:SF208HOGENOM:HOG000015149InParanoid:Q9LIF8InterPro:IPR001229
iPTMnet:Q9LIF8KEGG:ath:AT3G21380OMA:FSIHAPKPaxDb:Q9LIF8
Pfam:PF01419Pfam:Q9LIF8Pfscan:PS51752PhylomeDB:Q9LIF8
PRIDE:Q9LIF8PRO:PR:Q9LIF8ProMEX:Q9LIF8PROSITE:PS51752
ProteinModelPortal:Q9LIF8Proteomes:UP000006548RefSeq:NP_188775.2SMART:SM00915
SMR:Q9LIF8SUPFAM:SSF51101TAIR:AT3G21380UniGene:At.38069
UniProt:Q9LIF8
Coordinates (TAIR10) chr3:+:7528478..7530457
Molecular Weight (calculated) 49726.80 Da
IEP (calculated) 6.47
GRAVY (calculated) -0.64
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAATMSWDD GKHMKVKRVQ ITYEDVINSI EAEYDGDTHN PHHHGTPGKK SDGVSLSPDE YITDVTGYYK TTGAEDAIAA LAFKTNKTEY GPYGNKTRNQ
101: FSIHAPKDNQ IAGFQGISSN VLNSIDVHFA PLPSSSSSSS SLSQANKVDA QGGKGGTSWD DGAHDHVRRV YIGQGDSGVT YVKFEYEKDD KKESREHGKK
201: TLLGAEVFEV DPDDYITSVE VQSDRIFGQD TEVITSLIFK TSKGKFSPPF GLEGSQKYEL KDKNGGKLVG FHGRVGGELL NALGAYFAPS SGRGTPSATQ
301: PPGSAQPTGS AGAKKLEAKG GNVGNPWDDG PHEGVRKVYI GQGDSGVSYV KFVYDKDSKE VPGNDHGKRT LLAPEEFLLE YPNEYITSVE LNYDKIFGTE
401: GEIITMLRFT TNKRTSPPFG LEGAKSVLLK EDGHKIVGFH GKAGADIIHQ VGVHVKPISK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)