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AT2G41260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein / late embryogenesis abundant protein (M17)
Curator
Summary (TAIR10)
Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.
Computational
Description (TAIR10)
M17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein (M10) / LEA protein M10 (TAIR:AT2G41280.1); Has 3422 Blast hits to 2401 proteins in 322 species: Archae - 2; Bacteria - 405; Metazoa - 1403; Fungi - 273; Plants - 1003; Viruses - 37; Other Eukaryotes - 299 (source: NCBI BLink).
Protein Annotations
EMBL:AY128274EMBL:CP002685EnsemblPlants:AT2G41260EnsemblPlants:AT2G41260.1
entrez:818725ExpressionAtlas:Q8L7T1GeneID:818725Gramene:AT2G41260.1
HOGENOM:HOG000148630KEGG:ath:AT2G41260PhylomeDB:Q8L7T1Proteomes:UP000006548
RefSeq:NP_181659.2STRING:3702.AT2G41260.2TAIR:AT2G41260tair10-symbols:ATM17
tair10-symbols:M17UniGene:At.42858UniProt:Q8L7T1
Coordinates (TAIR10) chr2:+:17206541..17207492
Molecular Weight (calculated) 23888.60 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.67
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNLKSLVLL ALLFSFSVAV FANTSNDATH DEVKPSTEAT HAIEAQKHDG KPQIAEAQVE ANDPVVEPQQ DWGGRGGCRW GCCGGWWRGR CRYCCRSQAE
101: ASEVVETVEP NDVEPQQGGR GGGGGGGGGR GGCRWGCCGG WWRGRCRYCC RSQAEASEVV ETVEPNDVEP QQGGRGGGGG GGGGRGGCRW GCCGGWWRGR
201: CRYCCRSQAE ANEVVETVEA QQAKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)