AT3G22640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cupin family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PAP85; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, seed; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G36700.1); Has 886 Blast hits to 876 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 826; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8011902..8013883 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55066.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.15 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 486 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAITNKLIIT LLLLISIAVV HCLSFRVEID EFEPPQQGEQ EGPRRRPGGG SGEGWEEEST NHPYHFRKRS FSDWFQSKEG FVRVLPKFTK HAPALFRGIE 101: NYRFSLVEME PTTFFVPHHL DADAVFIVLQ GKGVIEFVTD KTKESFHITK GDVVRIPSGV TNFITNTNQT VPLRLAQITV PVNNPGNYKD YFPAASQFQQ 201: SYFNGFTKEV LSTSFNVPEE LLGRLVTRSK EIGQGIIRRI SPDQIKELAE HATSPSNKHK AKKEKEEDKD LRTLWTPFNL FAIDPIYSND FGHFHEAHPK 301: NYNQLQDLHI AAAWANMTQG SLFLPHFNSK TTFVTFVENG CARFEMATPY KFQRGQQQWP GQGQEEEEDM SENVHKVVSR VCKGEVFIVP AGHPFTILSQ 401: DQDFIAVGFG IYATNSKRTF LAGEENLLSN LNPAATRVTF GVGSKVAEKL FTSQNYSYFA PTSRSQQQIP EKHKPSFQSI LDFAGF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)