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AT3G56350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.980
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Iron/manganese superoxide dismutase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Iron/manganese superoxide dismutase family protein; FUNCTIONS IN: superoxide dismutase activity, metal ion binding; INVOLVED IN: oxidation reduction, superoxide metabolic process, removal of superoxide radicals; LOCATED IN: mitochondrion, endomembrane system; EXPRESSED IN: male gametophyte, seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: manganese superoxide dismutase 1 (TAIR:AT3G10920.1); Has 11272 Blast hits to 11271 proteins in 3338 species: Archae - 194; Bacteria - 7997; Metazoa - 445; Fungi - 707; Plants - 423; Viruses - 1; Other Eukaryotes - 1505 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G56350-MONOMERBioGrid:10118EC:1.15.1.1eggNOG:COG0605
eggNOG:KOG0876EMBL:AL163763EMBL:AY151395EMBL:BT004168
EMBL:CP002686EnsemblPlants:AT3G56350EnsemblPlants:AT3G56350.1entrez:824802
GeneID:824802Genevisible:Q9LYK8GO:GO:0004784GO:GO:0005759
GO:GO:0010227GO:GO:0046872Gramene:AT3G56350.1gramene_pathway:1.15.1.1
gramene_pathway:DETOX1-PWYhmmpanther:PTHR11404hmmpanther:PTHR11404:SF6HOGENOM:HOG000013583
InParanoid:Q9LYK8InterPro:IPR001189InterPro:IPR019831InterPro:IPR019832
InterPro:IPR019833KEGG:ath:AT3G56350KO:K04564OMA:SGWVWFG
PANTHER:PTHR11404PaxDb:Q9LYK8Pfam:PF00081Pfam:PF02777
Pfam:Q9LYK8PhylomeDB:Q9LYK8PIR:T47752PIRSF:PIRSF000349
PRIDE:Q9LYK8PRINTS:PR01703PRO:PR:Q9LYK8ProMEX:Q9LYK8
PROSITE:PS00088ProteinModelPortal:Q9LYK8Proteomes:UP000006548Reactome:R-ATH-3299685
RefSeq:NP_191194.1scanprosite:PS00088SMR:Q9LYK8STRING:3702.AT3G56350.1
SUPFAM:SSF46609SUPFAM:SSF54719TAIR:AT3G56350UniGene:At.34942
UniProt:Q9LYK8
Coordinates (TAIR10) chr3:-:20894155..20895625
Molecular Weight (calculated) 26893.10 Da
IEP (calculated) 6.76
GRAVY (calculated) -0.20
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTTVIIIIF VAIFATTLHD ARGATMEPCL ESMKTASLPD LPYAYDALEP AISEEIMRLH HQKHHQTYVT QYNKALNSLR SAMADGDHSS VVKLQSLIKF
101: NGGGHVNHAI FWKNLAPVHE GGGKPPHDPL ASAIDAHFGS LEGLIQKMNA EGAAVQGSGW VWFGLDRELK RLVVETTANQ DPLVTKGSHL VPLIGIDVWE
201: HAYYPQYKNA RAEYLKNIWT VINWKYAADV FEKHTRDLDI N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)