AT2G27380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : extensin proline-rich 1 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an extensin like gene involved in seed germination. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
extensin proline-rich 1 (EPR1); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall modification, seed germination; LOCATED IN: endomembrane system; EXPRESSED IN: micropylar endosperm; BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22142.1); Has 687861 Blast hits to 76128 proteins in 2770 species: Archae - 2570; Bacteria - 168893; Metazoa - 232232; Fungi - 83762; Plants - 88472; Viruses - 18896; Other Eukaryotes - 93036 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:11713411..11715696 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81950.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.62 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||
| Length | 761 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRVPLIDFLR FLVLILSLSG ASVAADATVK QNFNKYETDS GHAHPPPIYG APPSYTTPPP PIYSPPIYPP PIQKPPTYSP PIYPPPIQKP PTPTYSPPIY 101: PPPIQKPPTP TYSPPIYPPP IQKPPTPTYS PPIYPPPIQK PPTPSYSPPV KPPPVQMPPT PTYSPPIKPP PVHKPPTPTY SPPIKPPVHK PPTPIYSPPI 201: KPPPVHKPPT PIYSPPIKPP PVHKPPTPTY SPPVKPPPVH KPPTPIYSPP IKPPPVHKPP TPIYSPPVKP PPVQTPPTPI YSPPVKPPPV HKPPTPTYSP 301: PVKSPPVQKP PTPTYSPPIK PPPVQKPPTP TYSPPIKPPP VKPPTPIYSP PVKPPPVHKP PTPIYSPPVK PPPVHKPPTP IYSPPVKPPP IQKPPTPTYS 401: PPIKPPPLQK PPTPTYSPPI KLPPVKPPTP IYSPPVKPPP VHKPPTPIYS PPVKPPPVHK PPTPTYSPPI KPPPVKPPTP TYSPPVQPPP VQKPPTPTYS 501: PPVKPPPIQK PPTPTYSPPI KPPPVKPPTP TYSPPIKPPP VHKPPTPTYS PPIKPPPIHK PPTPTYSPPI KPPPVHKPPT PTYSPPIKPP PVHKPPTPTY 601: SPPIKPPPVH KPPTPTYSPP IKPPPVHKPP TPTYSPPIKP PPVHKPPTPT YSPPIKPPPV QKPPTPTYSP PVKPPPVQLP PTPTYSPPVK PPPVQVPPTP 701: TYSPPVKPPP VQVPPTPTYS PPIKPPPVQV PPTPTTPSPP QGGYGTPPPY AYLSHPIDIR N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)