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AT1G69880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23543785 (2013): endoplasmic reticulum endoplasmic reticulum membrane
  • PMID:23543785 (2013): Golgi Golgi apparatus Golgi membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : thioredoxin H-type 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
thioredoxin H-type 8 (TH8); INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 7 (TAIR:AT1G59730.1); Has 17541 Blast hits to 17273 proteins in 2948 species: Archae - 242; Bacteria - 9916; Metazoa - 1698; Fungi - 801; Plants - 1602; Viruses - 12; Other Eukaryotes - 3270 (source: NCBI BLink).
Protein Annotations
BioGrid:28545eggNOG:COG0526eggNOG:KOG0907EMBL:AC010675
EMBL:AK117825EMBL:BT003670EMBL:CP002684EnsemblPlants:AT1G69880
EnsemblPlants:AT1G69880.1entrez:843324Gene3D:3.40.30.10GeneID:843324
Genevisible:Q9CAS1GO:GO:0000103GO:GO:0005829GO:GO:0005886
GO:GO:0006457GO:GO:0006662GO:GO:0015035GO:GO:0016671
GO:GO:0034599GO:GO:0045454GO:GO:0055114Gramene:AT1G69880.1
hmmpanther:PTHR10438hmmpanther:PTHR10438:SF278HOGENOM:HOG000292977InParanoid:Q9CAS1
InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766InterPro:IPR017937
KEGG:ath:AT1G69880KO:K03671OMA:LMSVWMEPANTHER:PTHR10438
PaxDb:Q9CAS1Pfam:PF00085Pfam:Q9CAS1Pfscan:PS51352
PhylomeDB:Q9CAS1PIR:B96721PRIDE:Q9CAS1PRO:PR:Q9CAS1
PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q9CAS1Proteomes:UP000006548
RefSeq:NP_177146.1scanprosite:PS00194SMR:Q9CAS1STRING:3702.AT1G69880.1
SUPFAM:SSF52833TAIR:AT1G69880tair10-symbols:ATH8tair10-symbols:TH8
UniGene:At.35370UniProt:Q9CAS1
Coordinates (TAIR10) chr1:+:26321540..26322794
Molecular Weight (calculated) 17251.10 Da
IEP (calculated) 9.20
GRAVY (calculated) -0.27
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MGANVSTPDQ RFQVTHFRST KPWTPRPEIY PFKVNSPCIV EIKNMNQWKS RLNALKDTNK LLVIEFTAKW CGPCKTLEPK LEELAAKYTD VEFVKIDVDV
101: LMSVWMEFNL STLPAIVFMK RGREVDMVVG VKVDELERKL NKYTQSFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)