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AT4G21680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NITRATE TRANSPORTER 1.8
Curator
Summary (TAIR10)
Encodes a nitrate transporter (NRT1.8). Functions in nitrate removal from the xylem sap. Mediates cadmium tolerance.
Computational
Description (TAIR10)
NITRATE TRANSPORTER 1.8 (NRT1.8); FUNCTIONS IN: transporter activity, nitrate transmembrane transporter activity; INVOLVED IN: response to cadmium ion, oligopeptide transport, response to nitrate; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.5 (TAIR:AT1G32450.1); Has 7448 Blast hits to 7020 proteins in 1418 species: Archae - 0; Bacteria - 3502; Metazoa - 786; Fungi - 405; Plants - 2210; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).
Protein Annotations
BioGrid:13544eggNOG:COG3104eggNOG:KOG1237EMBL:AK118142
EMBL:AL035527EMBL:AL161555EMBL:CP002687EnsemblPlants:AT4G21680
EnsemblPlants:AT4G21680.1entrez:828255GeneID:828255Genevisible:Q8GXN2
GO:GO:0005886GO:GO:0010167GO:GO:0015112GO:GO:0015293
GO:GO:0015706GO:GO:0016021GO:GO:0042128GO:GO:0046686
Gramene:AT4G21680.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF90HOGENOM:HOG000237400
InParanoid:Q8GXN2InterPro:IPR000109InterPro:IPR020846KEGG:ath:AT4G21680
OMA:IFAYRRFPANTHER:PTHR11654PaxDb:Q8GXN2Pfam:PF00854
Pfam:Q8GXN2PhylomeDB:Q8GXN2PIR:T05843PRIDE:Q8GXN2
PRO:PR:Q8GXN2ProteinModelPortal:Q8GXN2Proteomes:UP000006548RefSeq:NP_193899.2
SMR:Q8GXN2STRING:3702.AT4G21680.1SUPFAM:SSF103473TAIR:AT4G21680
tair10-symbols:NRT1.8TMHMM:TMhelixUniGene:At.2700UniGene:At.32611
UniProt:Q8GXN2
Coordinates (TAIR10) chr4:-:11517540..11519576
Molecular Weight (calculated) 65511.00 Da
IEP (calculated) 6.51
GRAVY (calculated) 0.21
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQKVRQFEV CTQDGSVDRH GNPAIRANTG KWLTAILILV NQGLATLAFF GVGVNLVLFL TRVMGQDNAE AANNVSKWTG TVYIFSLLGA FLSDSYWGRY
101: KTCAIFQASF VAGLMMLSLS TGALLLEPSG CGVEDSPCKP HSTFKTVLFY LSVYLIALGY GGYQPNIATF GADQFDAEDS VEGHSKIAFF SYFYLALNLG
201: SLFSNTVLGY FEDQGEWPLG FWASAGSAFA GLVLFLIGTP KYRHFTPRES PWSRFCQVLV AATRKAKIDV HHEELNLYDS ETQYTGDKKI LHTKGFRFLD
301: RAAIVTPDDE AEKVESGSKY DPWRLCSVTQ VEEVKCVLRL LPIWLCTILY SVVFTQMASL FVVQGAAMKT NIKNFRIPAS SMSSFDILSV AFFIFAYRRF
401: LDPLFARLNK TERNKGLTEL QRMGIGLVIA IMAMISAGIV EIHRLKNKEP ESATSISSSS TLSIFWQVPQ YMLIGASEVF MYVGQLEFFN SQAPTGLKSF
501: ASALCMASIS LGNYVSSLLV SIVMKISTTD DVHGWIPENL NKGHLERFYF LLAGLTAADF VVYLICAKWY KYIKSEASFS ESVTEEEEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)