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AT3G52080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.681
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : cation/hydrogen exchanger 28
Curator
Summary (TAIR10)
encodes a cation:proton exchanger expressed in pollen
Computational
Description (TAIR10)
cation/hydrogen exchanger 28 (chx28); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/hydrogen exchanger 15 (TAIR:AT2G13620.1); Has 2845 Blast hits to 2827 proteins in 865 species: Archae - 172; Bacteria - 1868; Metazoa - 0; Fungi - 124; Plants - 540; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).
Protein Annotations
BioGrid:9689eggNOG:COG0475eggNOG:KOG1650EMBL:AL049711
EMBL:AY140034EMBL:CP002686EnsemblPlants:AT3G52080EnsemblPlants:AT3G52080.1
entrez:824371GeneID:824371Genevisible:Q8L709GO:GO:0005451
GO:GO:0006813GO:GO:0006885GO:GO:0012505GO:GO:0016020
GO:GO:0016021GO:GO:1902600Gramene:AT3G52080.1hmmpanther:PTHR32468
hmmpanther:PTHR32468:SF18HOGENOM:HOG000085142InParanoid:Q8L709InterPro:IPR006153
KEGG:ath:AT3G52080OMA:MELPFPWPaxDb:Q8L709Pfam:PF00999
Pfam:Q8L709PhylomeDB:Q8L709PIR:T49087PRIDE:Q8L709
PRO:PR:Q8L709ProteinModelPortal:Q8L709Proteomes:UP000006548RefSeq:NP_190776.2
STRING:3702.AT3G52080.1TAIR:AT3G52080tair10-symbols:chx28TMHMM:TMhelix
UniGene:At.35327UniProt:Q8L709
Coordinates (TAIR10) chr3:+:19315090..19317735
Molecular Weight (calculated) 88714.80 Da
IEP (calculated) 9.00
GRAVY (calculated) 0.24
Length 801 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSTTTKNVC GDKWYLNLDR PEEALKILVF IAIFVVRTLL HYLMKPLGQP YLTTDFAIGL ILGNIPRFRG AFSGPYSITL NNIIEFGMIC HMFVMGLEMN
101: PSVLLRPPTK DAFIAYTSMI TTFVLAFVTT PFLHYTKTSP YIFSLALSLM ASSTGSPILT RVIANLKIRK SDLGKLASAA GVHTDMISTL LYCFGFIFFP
201: TEKPLARPLH RFFRALLMFC LFLAQVTFTS IVSPIFLNWV NNENPEGKPL KGSHLVMSLA FVVLICSFPT WPPESMYNPI LSAFTAGLFL PNKGRMSKWI
301: INKINYLLST VFYPIFFFWV GFIIHMRNFD ITDKMAWVRF FSLLGTVIAG KVTGTVLCGL LLGYHVPETA SLGLLLTTKG HFHVYLAALA IRTNRVKSTT
401: GALIIFIIVF TVVYSPFVVM DIIKRARKRV PVHIMALQWL DPTTELRILI GLHGPHNIGS TLNVMEICHG GREPGSIFYA TDMVELTDEI AATLKKGGGA
501: GQSNDSVTVT DRSVTEMRES ITAAVNGYGE LRNGQGVTVR RMLALSTFVT MAHDVCGLAD ELMVSIIILP FHKRLNPDGT LDAGHAGFRH VNRKILKNAP
601: CSVGILVDRS FGQTEEAWRP GASMGIAIIF IGGRDDREAL AFAAQVARHP AVKLKVIRFL EDKSSQNAQK RSSILNRASV VDQEEEMKLD DECFAEFYER
701: YIAGGGRVSY MEKHLTNSSE TFTALKSLDG EYGLVIVGRG GGRASSGLTT GLNDWQQCPE LGPIGDVLSG SDFSHNTSML IIQQQRTRGQ LEGLHDDFTI
801: L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)