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AT4G25810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22430844 (2012): Golgi
  • PMID:18998720 (2009): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglycosylase 6
Curator
Summary (TAIR10)
xyloglucan endotransglycosylase-related protein (XTR6)
Computational
Description (TAIR10)
xyloglucan endotransglycosylase 6 (XTR6); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: Xyloglucan endotransglucosylase/hydrolase family protein (TAIR:AT5G57560.1); Has 2255 Blast hits to 2235 proteins in 316 species: Archae - 0; Bacteria - 302; Metazoa - 0; Fungi - 455; Plants - 1384; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G25810-MONOMERCAZy:GH16EC:2.4.1.207eggNOG:COG2273
eggNOG:ENOG410II9PEMBL:AL049480EMBL:AL161564EMBL:AY062472
EMBL:AY093252EMBL:CP002687EMBL:U43488EnsemblPlants:AT4G25810
EnsemblPlants:AT4G25810.1entrez:828686Gene3D:2.60.120.200GeneID:828686
Genevisible:Q38910GO:GO:0004553GO:GO:0005618GO:GO:0005794
GO:GO:0010411GO:GO:0016762GO:GO:0042546GO:GO:0048046
GO:GO:0071555Gramene:AT4G25810.1hmmpanther:PTHR31062hmmpanther:PTHR31062:SF20
HOGENOM:HOG000236368InParanoid:Q38910InterPro:IPR000757InterPro:IPR008263
InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455KEGG:ath:AT4G25810
KO:K08235OMA:PGSTWDEPaxDb:Q38910Pfam:PF00722
Pfam:PF06955Pfam:Q38910Pfscan:PS51762PhylomeDB:Q38910
PIR:S71225PIRSF:PIRSF005604PRIDE:Q38910PRO:PR:Q38910
PROSITE:PS01034PROSITE:PS51762ProteinModelPortal:Q38910Proteomes:UP000006548
RefSeq:NP_194311.1scanprosite:PS01034SMR:Q38910STRING:3702.AT4G25810.1
SUPFAM:SSF49899TAIR:AT4G25810tair10-symbols:XTH23tair10-symbols:XTR6
TMHMM:TMhelixUniGene:At.2901UniProt:Q38910
Coordinates (TAIR10) chr4:+:13128694..13129715
Molecular Weight (calculated) 32065.60 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.38
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMISYSTIV VALLASFMIC SVSANFQRDV EITWGDGRGQ ITNNGDLLTL SLDKASGSGF QSKNEYLFGK IDMQIKLVAG NSAGTVTAYY LKSPGSTWDE
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)