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AT4G34950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.537
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:25641898 (2015): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G16660.1); Has 3379 Blast hits to 3250 proteins in 882 species: Archae - 26; Bacteria - 1593; Metazoa - 4; Fungi - 302; Plants - 604; Viruses - 0; Other Eukaryotes - 850 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK15eggNOG:ENOG410Y7MYEMBL:AL079347EMBL:AL161586
EMBL:CP002687EnsemblPlants:AT4G34950EnsemblPlants:AT4G34950.1entrez:829647
GeneID:829647GO:GO:0016021Gramene:AT4G34950.1hmmpanther:PTHR21576
hmmpanther:PTHR21576:SF17HOGENOM:HOG000240321InterPro:IPR010658InterPro:IPR020846
KEGG:ath:AT4G34950OMA:AYRTKGIPfam:PF06813PhylomeDB:Q9SW40
PIR:T10241Proteomes:UP000006548RefSeq:NP_195221.1STRING:3702.AT4G34950.1
SUPFAM:SSF103473TAIR:AT4G34950TMHMM:TMhelixUniGene:At.43762
UniProt:Q9SW40
Coordinates (TAIR10) chr4:-:16642544..16644759
Molecular Weight (calculated) 60865.60 Da
IEP (calculated) 6.85
GRAVY (calculated) 0.56
Length 567 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFGTSSSSS SSSALKWLGF VTAVWVQSIS GNNYTFSNYS GALKSLMNLT QLELNSLSVA KDVGKAFGIL AGLASDRLST PVILLIGSFE GLLGYGVQWL
101: VVSRTIQPIP YWQMCVFLCM GGNSTTWMNT AVLVTCIRNF RRNRGPVSGI LKGYVGLSTA IFTDLCNALF SSDPASFLVL LSVVPFAVCL TAVFFLREIP
201: PSTTFAEDNE ESKYFAVFNI VAVVVAVYLQ SYDIIGIKTG AFSIAFASIL LILLASPVAV PFHAFIRSKV HDEQDVEGRI DEPLLRSGSE IEVEETIVGA
301: AAAADNELPP SLKPLSNEEE ENHGTIVTTE KKRPVLGEEH TIMEAMLTVD FWVLFVSFLC GVGTGLAVMN NMGQIGLALG YTDVSIFVSM TSIWGFFGRI
401: LSGTISEHFI KKAGTPRPLW NAAAQIIMAV GYLLMALALP GSLYIGSMVV GVCYGVRLAI TVPTASELFG LKYYGLIYNI LILNMPLGSF LFSGLLAGLL
501: YDAEATPTPG GGNTCVGAHC FRIVFIVMAF ASIIGVGLDL LLAYRTKGIY AKIHASKKTK KSGGNLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)