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AT3G18400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 58
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 58 (NAC058); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 38 (TAIR:AT2G24430.2); Has 3056 Blast hits to 3045 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3049; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ8XeggNOG:ENOG410YEYVEMBL:AB026658EMBL:CP002686
EnsemblPlants:AT3G18400EnsemblPlants:AT3G18400.1entrez:821369GeneID:821369
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT3G18400.1hmmpanther:PTHR31744hmmpanther:PTHR31744:SF3HOGENOM:HOG000237406
InterPro:IPR003441KEGG:ath:AT3G18400OMA:GSPCDANPfam:PF02365
Pfscan:PS51005PhylomeDB:Q9LS50PROSITE:PS51005Proteomes:UP000006548
RefSeq:NP_188469.1SMR:Q9LS50STRING:3702.AT3G18400.1SUPFAM:SSF101941
TAIR:AT3G18400tair10-symbols:anac058tair10-symbols:NAC058UniGene:At.53370
UniProt:Q9LS50
Coordinates (TAIR10) chr3:-:6318745..6320593
Molecular Weight (calculated) 35746.70 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.79
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKCEPWDL PAKASMGEKE WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV
101: LVGMKKTLVF YKGRAPKGEK SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF EKSTAAKKAQ EQQPQSSQPS FGSPCDANSS MANEFEDIDE LPNLNSNSST
201: IDYNNHIHQY SQRNVYSEDN TTSTAGLNMN MNMASTNLQS WTTSLLGPPL SPINSLLLKA FQIRNSYSFP KEMIPSFNHS SLQQGVSNMI QNASSSSQVQ
301: PQPQEEAFNM DSIW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)