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AT1G68200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G66810.1); Has 1124 Blast hits to 1011 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 463; Fungi - 91; Plants - 303; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5063eggNOG:KOG1677EMBL:AC016447EMBL:BT026077
EMBL:CP002684EMBL:DQ056514EMBL:DQ446410EnsemblPlants:AT1G68200
EnsemblPlants:AT1G68200.1entrez:843149Gene3D:4.10.1000.10GeneID:843149
Genevisible:Q9C9F5GO:GO:0003700GO:GO:0006355GO:GO:0044212
GO:GO:0046872hmmpanther:PTHR12547hmmpanther:PTHR12547:SF60HOGENOM:HOG000238120
InParanoid:Q9C9F5InterPro:IPR000571KEGG:ath:AT1G68200ncoils:Coil
OMA:AHGIKELPaxDb:Q9C9F5Pfam:PF00642Pfam:Q9C9F5
Pfscan:PS50103PhylomeDB:Q9C9F5PIR:D96705PRIDE:Q9C9F5
PRO:PR:Q9C9F5PROSITE:PS50103ProteinModelPortal:Q9C9F5Proteomes:UP000006548
Reactome:R-ATH-450385RefSeq:NP_001077792.1RefSeq:NP_176987.1SMART:SM00356
SMR:Q9C9F5STRING:3702.AT1G68200.1SUPFAM:SSF90229TAIR:AT1G68200
UniGene:At.52430UniProt:Q9C9F5
Coordinates (TAIR10) chr1:+:25562118..25563948
Molecular Weight (calculated) 34229.20 Da
IEP (calculated) 8.71
GRAVY (calculated) -0.80
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MENKIAPFSY SGSSAGNSSS GGVVSSSLYS DQLYKSTRNI MQQRQDMVNR EALCYTRLHE ASLEAEALRL ENTELRSMNL RLKNELNSLI RSSIQNRFDH
101: RSPLRMLSNL SIGGNDADEV ENQNRTVNRD DVNDKSPTSV MENEDLNRSS LPKSISVRSN GYSKASQGGG GAAAQSGKPR GTVTKPGTCG QVSTTQKVYV
201: RGGGKKEDQE EEIEVEVYNQ GMTKTELCNK WQETGTCPYG DHCQFAHGIK ELRPVIRHPR YKTEVCRMVL AGDNCPYGHR CHFRHSLSEQ EKLVAAGFKP
301: KSSLKLIT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)