suba logo
AT3G55530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Encodes an intracellular membrane localized protein with E3 ligase activity that is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA.
Computational
Description (TAIR10)
SALT- AND DROUGHT-INDUCED RING FINGER1 (SDIR1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G04790.1); Has 9775 Blast hits to 9747 proteins in 287 species: Archae - 0; Bacteria - 6; Metazoa - 2690; Fungi - 760; Plants - 4971; Viruses - 89; Other Eukaryotes - 1259 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AF386995
EMBL:AK317055EMBL:AL132975EMBL:BT006305EMBL:CP002686
EnsemblPlants:AT3G55530EnsemblPlants:AT3G55530.1entrez:824718Gene3D:3.30.40.10
GeneID:824718Genevisible:Q9M2S6GO:GO:0000209GO:GO:0004842
GO:GO:0005783GO:GO:0008270GO:GO:0009414GO:GO:0009651
GO:GO:0009737GO:GO:0009789GO:GO:0016021GO:GO:0016567
GO:GO:0016874GO:GO:0031090GO:GO:0042787GO:GO:0043161
GO:GO:0043231GO:GO:0061630Gramene:AT3G55530.1hmmpanther:PTHR22763
hmmpanther:PTHR22763:SF30HOGENOM:HOG000005982InParanoid:Q9M2S6InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT3G55530KO:K16283OMA:CLEQVTV
PaxDb:Q9M2S6Pfam:PF13639Pfam:Q9M2S6Pfscan:PS50089
PhylomeDB:Q9M2S6PIR:T47692PRIDE:Q9M2S6PRO:PR:Q9M2S6
PROSITE:PS50089ProteinModelPortal:Q9M2S6Proteomes:UP000006548RefSeq:NP_191112.1
SMART:SM00184SMR:Q9M2S6STRING:3702.AT3G55530.1SUPFAM:SSF57850
TAIR:AT3G55530tair10-symbols:SDIR1TMHMM:TMhelixUniGene:At.28462
UniGene:At.48772UniProt:Q9M2S6
Coordinates (TAIR10) chr3:-:20595300..20597188
Molecular Weight (calculated) 30186.10 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.12
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFVFRGSRG DLESGFSGGF LPERRAMRVH GARPVNSNSL AFLVTVLLLF MILNSHQMPP NFLLWLVLGV FLMATTLRMY ATCQQLQAHA QAQAAAASGL
101: FSHTELRLHV PPSIALATRG RLQGLRLQLA LLDREFDDLD YETLRALDSD NVSTTSMSEE EINALPVHKY KVLDPENGCS LAKQASTSSS AEKMLDSANE
201: SKKGTEDELT CSVCLEQVTV GEIVRTLPCL HQFHAGCIDP WLRQQGTCPV CKFRAHSGWQ EQDEIDDDAS DMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)