AT1G03280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription factor TFIIE, alpha subunit | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transcription factor TFIIE, alpha subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: endomembrane system, transcription factor TFIIE complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE, alpha subunit (TAIR:AT4G20340.1); Has 759 Blast hits to 706 proteins in 191 species: Archae - 5; Bacteria - 10; Metazoa - 313; Fungi - 190; Plants - 108; Viruses - 11; Other Eukaryotes - 122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:803635..806758 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54126.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.75 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||||||||||
| Length | 479 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKSGPVQKA VVLQPFVKLV RLVARAFYDD YTTKSDNQQK SARSDNRGIA AVVLDALARR QWVREEDLAK DLQLHAKQLR KIIRLFEEEK LIMRDHRKET 101: AKGAKMYSAA VAATTDGRAE DKVKLHTHSY CCLDYAQICD VVRFRLHRMK KRLKDELEDK NTVQEYGCPN CQRKYNALDA LRLISMVDDS FHCENCNGEL 201: VVECNKLTSE EVVDGDDNAR RRRRENLKNM LQKLEVQMKP LMDQLNRVKD LPIPEFGSFL AWEARAAMAA RENGDLNPND PLRSQGGYGS TPMPFLGETK 301: VEVNLGDGNE DVKSKGGDSS LKVLPPWMIK EGMNLTEEQR GEMRQEAKVD GGAGAAAKLS DDKKSAIGNG DEKDLKDEYL KAYYAELMKQ QELAARRNQQ 401: ESAGEPTSGI QSGTVYSGRQ VSMKAKREED EDEDEEEVEW EEKAPVTANG NYKVDLNVEA EASGGEEEEE EDDVDWEEG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)