AT3G13780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SMAD/FHA domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SMAD/FHA domain-containing protein ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984); Has 13742 Blast hits to 8952 proteins in 462 species: Archae - 7; Bacteria - 1954; Metazoa - 5288; Fungi - 1773; Plants - 718; Viruses - 188; Other Eukaryotes - 3814 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4525108..4526214 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35024.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.14 | ||||||||||||||||||||||||||||
| Length | 309 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNTKSLCESE ETTMEIEGED GTKLFLKTGV KDVFGRGAGF NTEDLTVSRR HVSLVFKPAA AGTEPSDMVS FEVLGRNPVW IRAVEKGKKI QTLRKPETGE 101: IATGDQFCVS GNHPIWFTLK RRDEVMEERA LDHGEIELNI DPVKEFGFLV IGKEFDQYPK SRVRDIKQWE WFLEDSTNGN SDGDEDGDKK GRKGLGKKRR 201: RKKGNEDDDW SVESDEDKEL MVKSKRVVTP TYSTRSKKTK KDSNASSSSS NGAQTKQRGR ADVEEEDDDD ETLGGFIVSD EEAKLEEEEE EEDESDVDDE 301: EDEDEEEEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)