AT4G08580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : microfibrillar-associated protein-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
microfibrillar-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Micro-fibrillar-associated 1, C-terminal (InterPro:IPR009730); BEST Arabidopsis thaliana protein match is: microfibrillar-associated protein-related (TAIR:AT5G17900.1); Has 41823 Blast hits to 26074 proteins in 1611 species: Archae - 271; Bacteria - 4310; Metazoa - 18112; Fungi - 3731; Plants - 1727; Viruses - 240; Other Eukaryotes - 13432 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:5462190..5463718 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51174.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.61 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.33 | ||||||||||||||||||||||||||||||||
| Length | 435 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSVTAGVSES AIAVREKLKG GIGQTKVRRY WPGKAPEWAE EAEEDDDVRM QKFSVLDRAF PKNDDLGVAR KDDPRLRRLA QTKVENRDEV RADHRRIRQA 101: EIISTEEEES RNQENRDEDD DEDALEERRR RIKEKNLRRA QEEAALLPLE EEDEIQEEEE EEEESEYETD SEDDMPGIAL IKPVFVPKAE RDTIAERERL 201: EAEEEALEEL AKRKLEQRKI ETKQIVVEEV RKDEEIRKNI LLEEANIGDV ETDDELNEAE EYEVWKTREI GRIKRERDAR EAMLREREEI EKLRNMTEQE 301: RRDWERKNPK PSSAQPKKKW NFMQKYYHKG AFFQADPDDE AGSAGTDGIF QRDFSAPTGE DRLDKSILPK VMQVKHFGRS GRTKWTHLVN EDTTDWSNPW 401: TSNDPLREKY NKKMAGMDAP IAKPKGSKKM KDWET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)