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AT4G08580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : microfibrillar-associated protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
microfibrillar-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Micro-fibrillar-associated 1, C-terminal (InterPro:IPR009730); BEST Arabidopsis thaliana protein match is: microfibrillar-associated protein-related (TAIR:AT5G17900.1); Has 41823 Blast hits to 26074 proteins in 1611 species: Archae - 271; Bacteria - 4310; Metazoa - 18112; Fungi - 3731; Plants - 1727; Viruses - 240; Other Eukaryotes - 13432 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y1JBeggNOG:KOG1425EMBL:AC002983EMBL:AF076275
EMBL:AL161512EMBL:CP002687EnsemblPlants:AT4G08580EnsemblPlants:AT4G08580.1
entrez:826419GeneID:826419GO:GO:0009507Gramene:AT4G08580.1
hmmpanther:PTHR15327hmmpanther:PTHR15327:SF0InterPro:IPR009730InterPro:IPR033194
KEGG:ath:AT4G08580KO:K13110ncoils:CoilOMA:FDRPTVK
PANTHER:PTHR15327:SF0Pfam:PF06991PhylomeDB:O22281PIR:T01826
Proteomes:UP000006548RefSeq:NP_192598.1STRING:3702.AT4G08580.1TAIR:AT4G08580
UniGene:At.31498UniGene:At.48832UniProt:O22281
Coordinates (TAIR10) chr4:+:5462190..5463718
Molecular Weight (calculated) 51174.30 Da
IEP (calculated) 4.61
GRAVY (calculated) -1.33
Length 435 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVTAGVSES AIAVREKLKG GIGQTKVRRY WPGKAPEWAE EAEEDDDVRM QKFSVLDRAF PKNDDLGVAR KDDPRLRRLA QTKVENRDEV RADHRRIRQA
101: EIISTEEEES RNQENRDEDD DEDALEERRR RIKEKNLRRA QEEAALLPLE EEDEIQEEEE EEEESEYETD SEDDMPGIAL IKPVFVPKAE RDTIAERERL
201: EAEEEALEEL AKRKLEQRKI ETKQIVVEEV RKDEEIRKNI LLEEANIGDV ETDDELNEAE EYEVWKTREI GRIKRERDAR EAMLREREEI EKLRNMTEQE
301: RRDWERKNPK PSSAQPKKKW NFMQKYYHKG AFFQADPDDE AGSAGTDGIF QRDFSAPTGE DRLDKSILPK VMQVKHFGRS GRTKWTHLVN EDTTDWSNPW
401: TSNDPLREKY NKKMAGMDAP IAKPKGSKKM KDWET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)