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AT4G11160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation initiation factor 2, small GTP-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation initiation factor 2, small GTP-binding protein; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation initiation factor 2 related (InterPro:IPR015760), Initiation factor 2 (InterPro:IPR000178), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation initiation factor 2, small GTP-binding protein (TAIR:AT1G17220.1); Has 56805 Blast hits to 56771 proteins in 4188 species: Archae - 1161; Bacteria - 37207; Metazoa - 1733; Fungi - 1367; Plants - 871; Viruses - 1; Other Eukaryotes - 14465 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1624-MONOMEReggNOG:COG0532eggNOG:KOG1145EMBL:AK175792
EMBL:AK176005EMBL:AK176053EMBL:AK176150EMBL:AK220747
EMBL:AK221093EMBL:BT015371EMBL:BT015894EMBL:CP002687
EnsemblPlants:AT4G11160EnsemblPlants:AT4G11160.1entrez:826717Gene3D:3.40.50.10050
Gene3D:3.40.50.300GeneID:826717GO:GO:0003743GO:GO:0003924
GO:GO:0005525GO:GO:0005622Gramene:AT4G11160.1HAMAP:MF_00100_B
hmmpanther:PTHR23115hmmpanther:PTHR23115:SF184InterPro:IPR000178InterPro:IPR000795
InterPro:IPR005225InterPro:IPR009000InterPro:IPR023115InterPro:IPR027417
KEGG:ath:AT4G11160KO:K02519ncoils:CoilOMA:DVIQCME
Pfam:PF00009Pfam:PF11987Pfscan:PS51722PhylomeDB:Q67ZW2
PROSITE:PS51722Proteomes:UP000006548RefSeq:NP_192854.2SMR:Q67ZW2
STRING:3702.AT4G11160.1SUPFAM:0037976SUPFAM:SSF50447SUPFAM:SSF52156
SUPFAM:SSF52540TAIR:AT4G11160TIGRfam:TIGR00231TIGRfam:TIGR00487
TIGRFAMs:TIGR00231TIGRFAMs:TIGR00487UniGene:At.3295UniProt:Q67ZW2
Coordinates (TAIR10) chr4:+:6803846..6806726
Molecular Weight (calculated) 80233.70 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.11
Length 743 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSFLSSLFG LGIQASFRIG LVLPRVVAST ERQISSTVLK RASESVSFSF APYINGFGFS SLSNWSRSYE SFPTETSIRY FHASRETLAK RKEDADRLLS
101: HRERKKQTVK TKGKFSKREK KTDKPPVEAP YVPPRLKRLA KGLPGKTVDI FEGMTLLELS KRTGESVAVL QSILINVGET FSSEFDTISV DVAELLAMEI
201: GINVRRQHST EGSEILPRPP VVTVMGHVDH GKTSLLDALR NTSVAAREAG GITQHVGAFV VGMPDSGTSI TFLDTPGHAA FSEMRARGAA VTDIVVLVVA
301: ADDGVMPQTL EAIAHARSAN VPVVVAINKC DKPGANPEKV KYQLTSEGIE LEDIGGNVQA VEVSAAKSTG LDKLEEALLL QAVDMDLKAR VDGPAQAYVV
401: EARLDKGRGP LATIIVKAGT LVRGQHVVIG CQWGRLRAIR DMIGKTTDRA TPAMPVEIEG LKGLPMAGDD VIVVESEERA RMLSEGRKRK YEKDRLLKAE
501: EARLEEAAAR LETESEEGFV RVELPIVVKS DVQGTAQAVA DALRTLNSPQ VSVNIVHSGV GAISHSDLDL AQACGACIVG FNVKGGSTGN LSAAQGSVKV
601: FHHRVIYHLL EDIGNLIVEK APGVSEMEVS GEAEVLSIFK ILGKRRTEED GVNIAGCKVM DGRVCRSGLM RLLRSGEVVF EGSCASLKRE KQDVEQVGKG
701: NECGLVFGDW NDFRVGDVIQ CMEPVIRKPK FISSESGAVR IEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)