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AT3G46790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At3g46790-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB, which is essential for ndhB translation.
Computational
Description (TAIR10)
CHLORORESPIRATORY REDUCTION 2 (CRR2); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 36401 Blast hits to 13536 proteins in 261 species: Archae - 0; Bacteria - 8; Metazoa - 92; Fungi - 72; Plants - 35786; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink).
Protein Annotations
BioGrid:9152eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK226825
EMBL:AL096859EMBL:CP002686EnsemblPlants:AT3G46790EnsemblPlants:AT3G46790.1
entrez:823832Gene3D:1.25.40.10GeneID:823832Genevisible:Q9STF3
GO:GO:0008270GO:GO:0009507GO:GO:0031425GO:GO:0031426
Gramene:AT3G46790.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF611HOGENOM:HOG000237570
InParanoid:Q9STF3InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT3G46790OMA:ACVASECPaxDb:Q9STF3Pfam:PF01535
Pfam:PF13041Pfam:PF13812Pfam:PF14432Pfam:Q9STF3
Pfscan:PS51375PhylomeDB:Q9STF3PIR:T12969PRIDE:Q9STF3
PRO:PR:Q9STF3PROSITE:PS51375ProteinModelPortal:Q9STF3Proteomes:UP000006548
RefSeq:NP_190263.1SMR:Q9STF3STRING:3702.AT3G46790.1TAIR:AT3G46790
tair10-symbols:CRR2TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.3629
UniProt:Q9STF3
Coordinates (TAIR10) chr3:-:17231975..17233948
Molecular Weight (calculated) 74344.50 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.19
Length 657 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLSHPPQVI QPTYHTVNFL PRSPLKPPSC SVALNNPSIS SGAGAKISNN QLIQSLCKEG KLKQAIRVLS QESSPSQQTY ELLILCCGHR SSLSDALRVH
101: RHILDNGSDQ DPFLATKLIG MYSDLGSVDY ARKVFDKTRK RTIYVWNALF RALTLAGHGE EVLGLYWKMN RIGVESDRFT YTYVLKACVA SECTVNHLMK
201: GKEIHAHLTR RGYSSHVYIM TTLVDMYARF GCVDYASYVF GGMPVRNVVS WSAMIACYAK NGKAFEALRT FREMMRETKD SSPNSVTMVS VLQACASLAA
301: LEQGKLIHGY ILRRGLDSIL PVISALVTMY GRCGKLEVGQ RVFDRMHDRD VVSWNSLISS YGVHGYGKKA IQIFEEMLAN GASPTPVTFV SVLGACSHEG
401: LVEEGKRLFE TMWRDHGIKP QIEHYACMVD LLGRANRLDE AAKMVQDMRT EPGPKVWGSL LGSCRIHGNV ELAERASRRL FALEPKNAGN YVLLADIYAE
501: AQMWDEVKRV KKLLEHRGLQ KLPGRCWMEV RRKMYSFVSV DEFNPLMEQI HAFLVKLAED MKEKGYIPQT KGVLYELETE EKERIVLGHS EKLALAFGLI
601: NTSKGEPIRI TKNLRLCEDC HLFTKFISKF MEKEILVRDV NRFHRFKNGV CSCGDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)