AT2G22100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G19380.1); Has 55861 Blast hits to 32453 proteins in 1538 species: Archae - 93; Bacteria - 4088; Metazoa - 24471; Fungi - 5728; Plants - 4956; Viruses - 222; Other Eukaryotes - 16303 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:9392397..9393545 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42885.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.74 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 382 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKEGEERKK EKKEKKERKE RKRREAEELA VREKKISKKH KSKSKEEEKP EKSKKKSKKY EEVEEEEKSP SPSPSPKKSK ESKKKHKRSS DESEEIVDSK 101: PVTVPIVTIE SDSDFEFDKE DIKNLLESYS KEELINLIYK TAEKGSKLIS AVFESADRDS SQRNIFVRGL GWDTTHENLK AAFEVYGEIT ECSVVMDKDT 201: GRAKGFGFVL FKTRKGARAA LKNPEKRMYN RTVSCLPARP FNSGKPREQQ QPVESVKIDL SHTGNQSEMA LPGIDLGHGL DKGHQQQQNM SMYAGQNMPF 301: YGHSQPPPGF NPMYGAMMGN PMVAGLQNYR MFGSGMMNQG PMMPPNHMGM VGQYVGDGNV NGVGAGAGAG AGFDGERAWY LR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)