suba logo
AT3G02760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.961
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class II aaRS and biotin synthetases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidyl-tRNA synthetase, class IIa, subgroup (InterPro:IPR015807), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Anticodon-binding (InterPro:IPR004154), Histidyl-tRNA synthetase, class IIa (InterPro:IPR004516), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Histidyl-tRNA synthetase 1 (TAIR:AT3G46100.1); Has 12532 Blast hits to 12512 proteins in 2976 species: Archae - 257; Bacteria - 7359; Metazoa - 371; Fungi - 267; Plants - 113; Viruses - 0; Other Eukaryotes - 4165 (source: NCBI BLink).
Protein Annotations
EC:6.1.1.21eggNOG:COG0124eggNOG:KOG1936EMBL:AC018363
EMBL:AK229577EMBL:CP002686EnsemblPlants:AT3G02760EnsemblPlants:AT3G02760.1
entrez:820930Gene3D:3.40.50.800GeneID:820930Genevisible:F4IYF8
GO:GO:0004821GO:GO:0005524GO:GO:0005829GO:GO:0006427
Gramene:AT3G02760.1gramene_pathway:6.1.1.21gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00127
hmmpanther:PTHR11476hmmpanther:PTHR11476:SF7InParanoid:F4IYF8InterPro:IPR004154
InterPro:IPR004516InterPro:IPR006195InterPro:IPR015807KEGG:00970+6.1.1.21
KEGG:ath:AT3G02760KO:K01892OMA:VWRIVGLPANTHER:PTHR11476
PaxDb:F4IYF8Pfam:PF03129Pfam:PF13393Pfscan:PS50862
PRIDE:F4IYF8PRO:PR:F4IYF8PROSITE:PS50862ProteinModelPortal:F4IYF8
Proteomes:UP000006548RefSeq:NP_186925.4SMR:F4IYF8STRING:3702.AT3G02760.1
SUPFAM:SSF52954SUPFAM:SSF55681TAIR:AT3G02760TIGRfam:TIGR00442
TIGRFAMs:TIGR00442UniGene:At.43888UniGene:At.69029UniProt:F4IYF8
Coordinates (TAIR10) chr3:-:597588..600650
Molecular Weight (calculated) 97542.50 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.23
Length 883 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAERSSITL GGKGSSLSSS SVYNVASGVA NVRIDSSAIE RFSTRNVPSI KRSSFGIPQG LTNEETRASL AVLLNKLILS TSGPPSSSTA RSVLPLKIVE
101: ILNLKAESLE LGEIDVTEGE NIVLEKSCAS LIGICSIIDH KSTTLSQIVD SVAALSCEVT KADIASFSLL DSGDGNGDKD VIGVAGDLKV LLNGYKGTGK
201: LEIEEISKIP WIHGKFRYVV KSVHADARRE LNSGVKGGKT GSGNTGIGEA LGTTLLPLLT AIKNLGVCSF LRAKLCFEKI VDENLKKCLS EKICVENENL
301: KNSYKLAYTA HLEEDYCRFA HKLNECLGIV WRIVGLEAVA AFFALAGGEL FVQKSGDADK EESKTDKKKK KNEKKAVVGK GTSLVIQFIK DRLVSNDAAS
401: DGDQMHSLMQ CGEQILNLFN PEGRSFDSLL DKVKEIVESN ENRRLPKLPK GTRDFAKEQM AVREKAFSII QNVFKRHGAT ALDTPVFELR ETLMGKYGED
501: SKLVYDIADQ GGELCSLRYD LTVPFARYVA MNGITSFKRY QIAKVYRRDN PSKGRYREFY QCDFDIAGLF EPMGPDFEIV KILTELLDEL EIGDYEVKLN
601: HRKLLDGMLE ICGVPPEKFR TICSSIDKLD KQSFEQVKKE MVEEKGLSSE IADRIGNFVK EKGAPLELLS KLRQEGSEFL DNQSSREALD ELSIMFEALK
701: RSKCSERIVF DLSLARGLDY YTGVIFEAVC IGAEVGSIGA GGRYDNLIGM FGTKQVPAVG MSLGIERVFN IMEELNEKQK QVIRPTETQV LVSIMVDNKL
801: AEAAELVSQL WGAKINAEYL VSKRKEKHFN RAKESGIPWM VMVGEKELSG SFVTLKKLEK GSEEKEDQTC TRDRFVEELK KLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)