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AT4G34680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA transcription factor 3
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 3 (GATA3); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 7 (TAIR:AT4G36240.1); Has 1460 Blast hits to 1422 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 551; Plants - 835; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AL023094EMBL:AL161586
EMBL:AY099790EMBL:AY128907EMBL:CP002687EMBL:Y13650
EnsemblPlants:AT4G34680EnsemblPlants:AT4G34680.1EnsemblPlants:AT4G34680.2entrez:829620
ExpressionAtlas:Q8L4M6Gene3D:3.30.50.10GeneID:829620Genevisible:Q8L4M6
GO:GO:0000977GO:GO:0001085GO:GO:0001228GO:GO:0003682
GO:GO:0003700GO:GO:0005634GO:GO:0005667GO:GO:0005730
GO:GO:0006366GO:GO:0007623GO:GO:0008270GO:GO:0030154
GO:GO:0045944Gramene:AT4G34680.1Gramene:AT4G34680.2hmmpanther:PTHR10071
hmmpanther:PTHR10071:SF213HOGENOM:HOG000238267InParanoid:Q8L4M6InterPro:IPR000679
InterPro:IPR013088InterPro:IPR016679KEGG:ath:AT4G34680OMA:FSSQPCI
PaxDb:Q8L4M6Pfam:PF00320Pfam:Q8L4M6Pfscan:PS50114
PhylomeDB:Q8L4M6PIR:H85408PIR:T05288PIRSF:PIRSF016992
PRO:PR:Q8L4M6PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:Q8L4M6
Proteomes:UP000006548RefSeq:NP_001031789.1RefSeq:NP_195194.1scanprosite:PS00344
SMART:SM00401SMR:Q8L4M6STRING:3702.AT4G34680.1SUPFAM:SSF57716
TAIR:AT4G34680tair10-symbols:GATA3UniGene:At.24640UniGene:At.65454
UniGene:At.70827UniProt:B9DGI2UniProt:Q8L4M6
Coordinates (TAIR10) chr4:+:16553700..16554610
Molecular Weight (calculated) 30469.60 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.76
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MELWTEARAL KASLRGESTI SLKHHQVIVS EDLSRTSSLP EDFSVECFLD FSEGQKEEEE EVVSVSSSQE QEEQEHDCVF SSQPCIFDQL PSLPDEDVEE
101: LEWVSRVVDD CSSPEVSLLL TQTHKTKPSF SRIPVKPRTK RSRNSLTGSR VWPLVSTNHQ HAATEQLRKK KQETVLVFQR RCSHCGTNNT PQWRTGPVGP
201: KTLCNACGVR FKSGRLCPEY RPADSPTFSN EIHSNLHRKV LELRKSKELG EETGEASTKS DPVKFGSKW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)