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AT1G55760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.758
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BTB/POZ domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G21780.2); Has 5280 Blast hits to 5249 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 3933; Fungi - 29; Plants - 1085; Viruses - 19; Other Eukaryotes - 214 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AC002328EMBL:AK175625
EMBL:AK175859EMBL:BT022097EMBL:CP002684EnsemblPlants:AT1G55760
EnsemblPlants:AT1G55760.1entrez:842025GeneID:842025Genevisible:Q680K8
GO:GO:0016567Gramene:AT1G55760.1hmmpanther:PTHR24413hmmpanther:PTHR24413:SF43
HOGENOM:HOG000005687InterPro:IPR000210InterPro:IPR011333KEGG:ath:AT1G55760
KO:K10523OMA:YIYGNIQPaxDb:Q680K8Pfam:PF00651
Pfam:Q680K8Pfscan:PS50097PhylomeDB:Q680K8PRIDE:Q680K8
PRO:PR:Q680K8PROSITE:PS50097ProteinModelPortal:Q680K8Proteomes:UP000006548
RefSeq:NP_175972.1SMART:SM00225SMR:Q680K8STRING:3702.AT1G55760.1
SUPFAM:SSF54695TAIR:AT1G55760UniGene:At.49979UniPathway:UPA00143
UniProt:Q680K8
Coordinates (TAIR10) chr1:-:20847117..20848507
Molecular Weight (calculated) 37671.20 Da
IEP (calculated) 5.44
GRAVY (calculated) -0.14
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MTDSAYRVDT ISRLAQWRIH NLSSSTYRKS DPFKMGLWNW HLSVEKSKML LNVKLYPEVS NLTRENPPVA SFALRVVSST GERKALSHPE VIDKRIKTNE
101: DFIWTIEVPL TGKIIIDVEF LDLKVLSQDS GELYSIWANG STENQSQVTA VTSLGRMLTE SIYTDITINA SDGSIGAHRA VLAARSPVFR SMFLHDLKEK
201: ELSEINVLDM PLDACQAFLS YIYGNIQNED FLIHRLALLQ AAEKYDIADL KEACHLSLLD DIDTKNVLER LQNAYLYQLP ELKASCMRYL VKFGKIFEIR
301: DEFNIFMQCA DRDLISEIFH EVLSTWKGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)