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AT4G38620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 4
Curator
Summary (TAIR10)
Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.
Computational
Description (TAIR10)
myb domain protein 4 (MYB4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 32 (TAIR:AT4G34990.1); Has 9208 Blast hits to 8453 proteins in 515 species: Archae - 0; Bacteria - 0; Metazoa - 855; Fungi - 510; Plants - 6018; Viruses - 3; Other Eukaryotes - 1822 (source: NCBI BLink).
Protein Annotations
BioGrid:15298eggNOG:COG5147eggNOG:KOG0048EMBL:AF062860
EMBL:AL035540EMBL:AL161593EMBL:AY070100EMBL:AY123004
EMBL:AY140037EMBL:AY519615EMBL:BT006302EMBL:CP002687
EMBL:Z95763EnsemblPlants:AT4G38620EnsemblPlants:AT4G38620.1entrez:830018
Gene3D:1.10.10.60GeneID:830018Genevisible:Q9SZP1GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009751
GO:GO:0009753GO:GO:0010224GO:GO:0045892GO:GO:1903086
GO:GO:2000762Gramene:AT4G38620.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF588
HOGENOM:HOG000237600InParanoid:Q9SZP1IntAct:Q9SZP1InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT4G38620KO:K09422
OMA:MECRCGRPaxDb:Q9SZP1Pfam:PF00249Pfam:Q9SZP1
Pfscan:PS51294PhylomeDB:Q9SZP1PIR:T05690PIR:T51632
PRO:PR:Q9SZP1PROSITE:PS51294ProteinModelPortal:Q9SZP1Proteomes:UP000006548
RefSeq:NP_195574.1SMART:SM00717SMR:Q9SZP1STRING:3702.AT4G38620.1
SUPFAM:SSF46689TAIR:AT4G38620tair10-symbols:ATMYB4tair10-symbols:MYB4
UniGene:At.20521UniProt:Q9SZP1
Coordinates (TAIR10) chr4:+:18053866..18054876
Molecular Weight (calculated) 31810.10 Da
IEP (calculated) 8.76
GRAVY (calculated) -0.65
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)