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AT4G34990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 32
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 32 (MYB32); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 7 (TAIR:AT2G16720.1); Has 9023 Blast hits to 8385 proteins in 476 species: Archae - 0; Bacteria - 0; Metazoa - 680; Fungi - 473; Plants - 6077; Viruses - 3; Other Eukaryotes - 1790 (source: NCBI BLink).
Protein Annotations
BioGrid:14933eggNOG:COG5147eggNOG:KOG0048EMBL:AF062874
EMBL:AL022023EMBL:AL161586EMBL:AY519612EMBL:BT024907
EMBL:CP002687EMBL:U26933EMBL:Z95756EnsemblPlants:AT4G34990
EnsemblPlants:AT4G34990.1entrez:829651Gene3D:1.10.10.60GeneID:829651
Genevisible:O49608GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009651GO:GO:0009723GO:GO:0009737
GO:GO:0009751GO:GO:0009753GO:GO:0046686Gramene:AT4G34990.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF588HOGENOM:HOG000237600InParanoid:O49608
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT4G34990
KO:K09422OMA:ATHRPINPaxDb:O49608Pfam:O49608
Pfam:PF00249Pfscan:PS51294PhylomeDB:O49608PIR:T05769
PIR:T51646PRIDE:O49608PRO:PR:O49608PROSITE:PS51294
ProteinModelPortal:O49608Proteomes:UP000006548RefSeq:NP_195225.1SMART:SM00717
SMR:O49608STRING:3702.AT4G34990.1SUPFAM:SSF46689TAIR:AT4G34990
tair10-symbols:AtMYB32tair10-symbols:MYB32UniGene:At.28679UniProt:O49608
Coordinates (TAIR10) chr4:-:16661370..16662289
Molecular Weight (calculated) 31459.20 Da
IEP (calculated) 8.74
GRAVY (calculated) -0.80
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSPCCEKD HTNKGAWTKE EDDKLISYIK AHGEGCWRSL PRSAGLQRCG KSCRLRWINY LRPDLKRGNF TLEEDDLIIK LHSLLGNKWS LIATRLPGRT
101: DNEIKNYWNT HVKRKLLRKG IDPATHRPIN ETKTSQDSSD SSKTEDPLVK ILSFGPQLEK IANFGDERIQ KRVEYSVVEE RCLDLNLELR ISPPWQDKLH
201: DERNLRFGRV KYRCSACRFG FGNGKECSCN NVKCQTEDSS SSSYSSTDIS SSIGYDFLGL NNTRVLDFST LEMK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)