AT1G04570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Biopterin transport-related protein BT1 (InterPro:IPR004324), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G33280.1); Has 816 Blast hits to 814 proteins in 271 species: Archae - 6; Bacteria - 387; Metazoa - 0; Fungi - 18; Plants - 232; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1246859..1248600 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59510.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.49 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.33 | ||||||||||||||||||||||||||||||||||||||||
| Length | 542 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERIMINPLL SIQNSPTKFL KPPLSSIHRQ QQQQERQSNN NTLFMGEARP RRATTFACLS IRRRRNNNGV SEFEETARFE QVGGKGISVL CGLGYWVQGS 101: RCFPWLALNF HMVHSLALQP STLQLVQYSC SLPMVAKPLY GVLSDVLYIG SGRRVPYIAI GVFLQVLAWG SMGIFQGARE VLPSLVACVL LSNLGASITE 201: VAKDALVAEY GLRYRINGLQ SYALMASAAG GVLGNLLGGY LLLTTPPKIS FLVFSALLSL QLVVSLSSKE ESFGLPRIAE TSSVLESVKK QISNLKEAIQ 301: ADEISQPLIW AVVSIAMVPL LSGSVFCYQT QVLNLDPSVI GMSKVIGQLM LLCLTVVYDR YLKTLPMRPL IHIIQLLYGL SILLDYILVK QINLGFGISN 401: EVYVLCFSSL AEILAQFKIL PFAVRLASMC PQGCEGSVTS FLASTLCLSQ IVSAFLGVGL ANLIGITSSN YSNLSSGILI QSLAALAPLC FMHLVPMSEP 501: VIEKEGKRGI SKRSRRNRRV GRVVDKESVT YRRERESEEA QR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)