AT2G40130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.922 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 212 Blast hits to 210 proteins in 27 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 2; Plants - 199; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16766030..16767821 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54618.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.09 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 491 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPTAVNVAKQ CLTAEASYAL EEAVNVARRR GHSQTTSLHA ISALLSLPTS VLRDACARVR NSAYSPRLQF KALDLCLSVS LDRIQSGHQL GSDDSPPVSN 101: SLMAAIKRSQ AHQRRLPENF RIYQEMSQSQ NQNSLSCVKV ELRQLILSIL DDPVVSRVFG EAGFRSSELK LSIIRPVPHL LRYSSQQPLF LCNLTGNPEP 201: NPVRWGFTVP SLNFNGDLDY RRISAVFTKD KGRNPLLVGV SAYGVLTSYL NSLEKNQTDG MILPTKLHGL TAVNIGSEIS DQISVKFDKT YTDTRFHDLG 301: KLAEQGSGPG LLLHYGDLRV FTNGEGNVPA ANYIVNRISE LLRRHGRRVW LIGATTSNEV YEKMMRRFPN VEKDWDLQLL TITSLKPCLP HNKSSLIGSF 401: VPFGGFFSTT PSELKLPFSG FKTEITGPVS SISDQTQSTL PPWLQMTTRT DLNQKSSAKC RPKKGWNQFV EISSRAVLLH RPVQLNRSPL I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)