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AT2G41510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29301955 (2018): endoplasmic reticulum
  • PMID:14555694 (2003): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytokinin oxidase/dehydrogenase 1
Curator
Summary (TAIR10)
It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational
Description (TAIR10)
cytokinin oxidase/dehydrogenase 1 (CKX1); FUNCTIONS IN: cytokinin dehydrogenase activity; INVOLVED IN: N-terminal protein myristoylation, cytokinin catabolic process, meristem development; LOCATED IN: vacuole; EXPRESSED IN: lateral root, shoot apex, hypocotyl, root, flower; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 6 (TAIR:AT3G63440.1); Has 6769 Blast hits to 6763 proteins in 1376 species: Archae - 168; Bacteria - 3882; Metazoa - 142; Fungi - 1302; Plants - 645; Viruses - 0; Other Eukaryotes - 630 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT2G41510-MONOMERBRENDA:1.5.99.12EC:1.5.99.12eggNOG:COG0277
eggNOG:KOG1231EMBL:AC002510EMBL:AK226615EMBL:CP002685
EnsemblPlants:AT2G41510EnsemblPlants:AT2G41510.1entrez:818749Gene3D:3.30.43.10
Gene3D:3.30.465.10Gene3D:3.40.462.10GeneID:818749Genevisible:O22213
GO:GO:0005773GO:GO:0009823GO:GO:0016614GO:GO:0019139
GO:GO:0048507GO:GO:0050660Gramene:AT2G41510.1gramene_pathway:1.5.99.12
gramene_pathway:PWY-2841hmmpanther:PTHR13878hmmpanther:PTHR13878:SF53HOGENOM:HOG000237593
InParanoid:O22213InterPro:IPR006093InterPro:IPR006094InterPro:IPR015345
InterPro:IPR016164InterPro:IPR016166InterPro:IPR016167InterPro:IPR016169
InterPro:IPR016170KEGG:ath:AT2G41510KO:K00279OMA:VIINRTD
PaxDb:O22213Pfam:O22213Pfam:PF01565Pfam:PF09265
Pfscan:PS51387PhylomeDB:O22213PIR:T00807PRIDE:O22213
PRO:PR:O22213PROSITE:PS00862PROSITE:PS51387ProteinModelPortal:O22213
Proteomes:UP000006548RefSeq:NP_181682.1SABIO-RK:O22213scanprosite:PS00862
SMR:O22213STRING:3702.AT2G41510.1SUPFAM:SSF55103SUPFAM:SSF56176
TAIR:AT2G41510tair10-symbols:ATCKX1tair10-symbols:CKX1UniGene:At.42824
UniProt:O22213
Coordinates (TAIR10) chr2:+:17314626..17316861
Molecular Weight (calculated) 64927.80 Da
IEP (calculated) 9.76
GRAVY (calculated) -0.29
Length 575 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLTSSLRFH RQNNKTFLGI FMILVLSCIP GRTNLCSNHS VSTPKELPSS NPSDIRSSLV SLDLEGYISF DDVHNVAKDF GNRYQLPPLA ILHPRSVFDI
101: SSMMKHIVHL GSTSNLTVAA RGHGHSLQGQ ALAHQGVVIK MESLRSPDIR IYKGKQPYVD VSGGEIWINI LRETLKYGLS PKSWTDYLHL TVGGTLSNAG
201: ISGQAFKHGP QINNVYQLEI VTGKGEVVTC SEKRNSELFF SVLGGLGQFG IITRARISLE PAPHMVKWIR VLYSDFSAFS RDQEYLISKE KTFDYVEGFV
301: IINRTDLLNN WRSSFSPNDS TQASRFKSDG KTLYCLEVVK YFNPEEASSM DQETGKLLSE LNYIPSTLFS SEVPYIEFLD RVHIAERKLR AKGLWEVPHP
401: WLNLLIPKSS IYQFATEVFN NILTSNNNGP ILIYPVNQSK WKKHTSLITP NEDIFYLVAF LPSAVPNSSG KNDLEYLLKQ NQRVMNFCAA ANLNVKQYLP
501: HYETQKEWKS HFGKRWETFA QRKQAYDPLA ILAPGQRIFQ KTTGKLSPIQ LAKSKATGSP QRYHYASILP KPRTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)